Cow genome map

Conread name: rpfco0140_i1.y1

Conread position: 1-146
Cow position:
Alignm length: 146
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 2-118
Cow position:
Alignm length: 122
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 68

Conread position: 2-118
Cow position:
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 2-121
Cow position:
Alignm length: 121
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 38, 66

Conread position: 2-134
Cow position:
Alignm length: 133
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 2-142
Cow position:
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 77

Conread position: 2-144
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 31, 40

Conread position: 2-144
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 30, 52

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 30, 63

Conread position: 2-146
Cow position:
Alignm length: 149
Alignm identity: 119
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 67

Conread position: 2-146
Cow position:
Alignm length: 150
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 49

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 69

Conread position: 2-146
Cow position:
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 78

Conread position: 2-146
Cow position:
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 65

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 67

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 2-146
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 80

Conread position: 2-146
Cow position:
Alignm length: 150
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 59

Conread position: 2-146
Cow position:
Alignm length: 147
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 67

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 2-146
Cow position:
Alignm length: 148
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 63

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 59, 89

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 2-146
Cow position:
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 5

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 46, 55

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 2-146
Cow position:
Alignm length: 147
Alignm identity: 120
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 30, 52

Conread position: 2-146
Cow position:
Alignm length: 146
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 72

Conread position: 2-146
Cow position:
Alignm length: 156
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 30, 101

Conread position: 2-147
Cow position:
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 55

Conread position: 2-149
Cow position:
Alignm length: 152
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 2-149
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 72

Conread position: 2-166
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 138, 66

Conread position: 2-170
Cow position:
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 2-172
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 73

Conread position: 2-231
Cow position:
Alignm length: 234
Alignm identity: 167
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 30, 71

Conread position: 2-269
Cow position:
Alignm length: 283
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 84

Conread position: 2-284
Cow position:
Alignm length: 283
Alignm identity: 192
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 2-326
Cow position:
Alignm length: 330
Alignm identity: 220
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 15, 59

Conread position: 2-346
Cow position:
Alignm length: 346
Alignm identity: 235
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 191, 25

Conread position: 2-381
Cow position:
Alignm length: 380
Alignm identity: 264
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 2-389
Cow position:
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 49

Conread position: 2-423
Cow position:
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 66

Conread position: 2-446
Cow position:
Alignm length: 456
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 72

Conread position: 2-462
Cow position:
Alignm length: 473
Alignm identity: 316
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 38, 66

Conread position: 2-482
Cow position:
Alignm length: 523
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 2-504
Cow position:
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 74

Conread position: 2-532
Cow position:
Alignm length: 541
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 77

Conread position: 2-545
Cow position:
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 65

Conread position: 2-569
Cow position:
Alignm length: 581
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 54

Conread position: 2-575
Cow position:
Alignm length: 575
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 65

Conread position: 2-577
Cow position:
Alignm length: 597
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 66

Conread position: 2-581
Cow position:
Alignm length: 598
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 153

Conread position: 2-583
Cow position:
Alignm length: 590
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 31

Conread position: 2-583
Cow position:
Alignm length: 603
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 53

Conread position: 2-583
Cow position:
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 41

Conread position: 2-584
Cow position:
Alignm length: 596
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 54

Conread position: 3-140
Cow position:
Alignm length: 140
Alignm identity: 111
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 30, 72

Conread position: 3-145
Cow position:
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 91, 16

Conread position: 3-146
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 72

Conread position: 3-146
Cow position:
Alignm length: 144
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 3-146
Cow position:
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 54

Conread position: 3-146
Cow position:
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 3-146
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 54

Conread position: 3-146
Cow position:
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 68, 82

Conread position: 3-146
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 3-310
Cow position:
Alignm length: 308
Alignm identity: 220
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 3-335
Cow position:
Alignm length: 336
Alignm identity: 238
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 109, 64

Conread position: 3-583
Cow position:
Alignm length: 590
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 29

Conread position: 4-146
Cow position:
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 4-146
Cow position:
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 4-146
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 70

Conread position: 4-146
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 28, 72

Conread position: 4-146
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 72

Conread position: 4-329
Cow position:
Alignm length: 327
Alignm identity: 232
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 180, 61

Conread position: 5-146
Cow position:
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 65

Conread position: 7-306
Cow position:
Alignm length: 301
Alignm identity: 213
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 27, 67

Conread position: 8-274
Cow position:
Alignm length: 284
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 38

Conread position: 16-146
Cow position:
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 62

Conread position: 16-264
Cow position:
Alignm length: 249
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 24-342
Cow position:
Alignm length: 324
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 148, 42

Conread position: 24-575
Cow position:
Alignm length: 576
Alignm identity: 372
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 122, 49

Conread position: 50-583
Cow position:
Alignm length: 549
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 23

Conread position: 85-370
Cow position:
Alignm length: 291
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 107

Conread position: 106-583
Cow position:
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Conread position: 145-303
Cow position:
Alignm length: 159
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 168-398
Cow position:
Alignm length: 233
Alignm identity: 167
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 5, 67

Conread position: 201-342
Cow position:
Alignm length: 143
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 19, 84

Conread position: 207-516
Cow position:
Alignm length: 320
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 207-567
Cow position:
Alignm length: 368
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 139

Conread position: 208-418
Cow position:
Alignm length: 217
Alignm identity: 162
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 174, 131

Conread position: 208-451
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 174, 20

Conread position: 208-583
Cow position:
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 118

Conread position: 208-589
Cow position:
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 131

Conread position: 209-427
Cow position:
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 188, 129

Conread position: 209-514
Cow position:
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 101

Conread position: 209-578
Cow position:
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 139

Conread position: 210-392
Cow position:
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 210-397
Cow position:
Alignm length: 188
Alignm identity: 135
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 210-581
Cow position:
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 119

Conread position: 210-583
Cow position:
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 14

Conread position: 210-584
Cow position:
Alignm length: 383
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 135

Conread position: 212-486
Cow position:
Alignm length: 278
Alignm identity: 185
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 85

Conread position: 213-397
Cow position:
Alignm length: 185
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 135, 0

Conread position: 217-583
Cow position:
Alignm length: 368
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 52

Conread position: 221-532
Cow position:
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 99

Conread position: 221-581
Cow position:
Alignm length: 368
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 123

Conread position: 221-582
Cow position:
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 118

Conread position: 222-575
Cow position:
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 276

Conread position: 223-407
Cow position:
Alignm length: 187
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 166

Conread position: 225-337
Cow position:
Alignm length: 113
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 225-397
Cow position:
Alignm length: 175
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 81, 122

Conread position: 226-580
Cow position:
Alignm length: 364
Alignm identity: 254
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 71, 95

Conread position: 228-423
Cow position:
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 80, 118

Conread position: 244-583
Cow position:
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 147

Conread position: 250-517
Cow position:
Alignm length: 278
Alignm identity: 198
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 90, 0

Conread position: 264-500
Cow position:
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 69, 39

Conread position: 267-585
Cow position:
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 79

Conread position: 270-484
Cow position:
Alignm length: 222
Alignm identity: 156
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 119, 75

Conread position: 273-575
Cow position:
Alignm length: 311
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 116, 74

Conread position: 295-583
Cow position:
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 13

Conread position: 306-583
Cow position:
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 39

Conread position: 344-583
Cow position:
Alignm length: 256
Alignm identity: 182
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 145

Show alignments to all cow chromosomes.