Cow genome map

Conread name: rpgl08_f5.y1

Conread position: 1-288
Cow position: chr1:78259623-78259321 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 105, 144

Conread position: 4-371
Cow position: chr1:20807378-20807000 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 118

Conread position: 5-356
Cow position: chr1:33914533-33914193 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 12

Conread position: 5-378
Cow position: chr1:16524798-16525144 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 129, 62

Conread position: 5-391
Cow position: chr1:61606262-61606639 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 21

Conread position: 5-391
Cow position: chr1:67902504-67902125 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 18

Conread position: 5-391
Cow position: chr1:100397211-100397591 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 146

Conread position: 6-356
Cow position: chr1:80969019-80968675 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 17

Conread position: 7-302
Cow position: chr1:40415326-40415611 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 10

Conread position: 7-318
Cow position: chr1:57220717-57220414 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 16

Conread position: 7-346
Cow position: chr1:70177922-70178269 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 16

Conread position: 8-352
Cow position: chr1:88973470-88973123 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 133

Conread position: 8-371
Cow position: chr1:13992219-13992570 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 15

Conread position: 8-371
Cow position: chr1:31127216-31126843 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 15

Conread position: 8-375
Cow position: chr1:85001110-85000753 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 24

Conread position: 8-391
Cow position: chr1:6309660-6309285 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 9

Conread position: 8-391
Cow position: chr1:7489530-7489154 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 15

Conread position: 12-289
Cow position: chr1:26512036-26511765 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 42

Conread position: 12-371
Cow position: chr1:31979300-31978951 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 162

Conread position: 13-201
Cow position: chr1:77376729-77376912 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 13-345
Cow position: chr1:94409377-94409043 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 13

Conread position: 13-371
Cow position: chr1:57562616-57562966 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 156

Conread position: 13-371
Cow position: chr1:71086680-71087031 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 10

Conread position: 13-375
Cow position: chr1:8142648-8143000 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 256
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 41

Conread position: 13-378
Cow position: chr1:24684684-24684336 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 10

Conread position: 13-382
Cow position: chr1:89407664-89407309 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 10

Conread position: 13-386
Cow position: chr1:100045725-100046101 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 13

Conread position: 14-352
Cow position: chr1:86643385-86643059 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 13

Conread position: 15-132
Cow position: chr1:57893135-57893254 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 16-283
Cow position: chr1:13850947-13850688 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 140

Conread position: 16-371
Cow position: chr1:15984069-15983730 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 11

Conread position: 16-386
Cow position: chr1:46388952-46389329 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 140

Conread position: 17-160
Cow position: chr1:82420191-82420334 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 17-320
Cow position: chr1:45154017-45153711 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 78, 88

Conread position: 17-348
Cow position: chr1:41607093-41607440 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 160

Conread position: 17-349
Cow position: chr1:12521646-12521309 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 86

Conread position: 17-349
Cow position: chr1:12569046-12568709 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 86

Conread position: 17-363
Cow position: chr1:17092042-17092402 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 34

Conread position: 17-364
Cow position: chr1:92708792-92709134 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 73

Conread position: 17-370
Cow position: chr1:40377770-40378101 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 95

Conread position: 18-238
Cow position: chr1:87740887-87741100 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 48, 137

Conread position: 18-355
Cow position: chr1:80175232-80174901 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 129

Conread position: 18-391
Cow position: chr1:94390400-94390761 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 130

Conread position: 19-318
Cow position: chr1:8447180-8446892 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 197, 26

Conread position: 19-319
Cow position: chr1:10432242-10431950 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 57

Conread position: 19-375
Cow position: chr1:23086750-23086390 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 32

Conread position: 19-375
Cow position: chr1:43588300-43588647 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 141

Conread position: 19-378
Cow position: chr1:35544706-35544356 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 33

Conread position: 20-280
Cow position: chr1:14169816-14169564 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 6, 128

Conread position: 20-349
Cow position: chr1:20264904-20264575 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 148

Conread position: 20-356
Cow position: chr1:65187438-65187764 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 120

Conread position: 20-369
Cow position: chr1:24509267-24509605 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 59

Conread position: 20-371
Cow position: chr1:84760904-84760573 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 76

Conread position: 20-378
Cow position: chr1:94744525-94744875 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 134

Conread position: 22-194
Cow position: chr1:13313675-13313851 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 107, 130

Conread position: 23-362
Cow position: chr1:4264984-4264630 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 20

Conread position: 23-371
Cow position: chr1:14383378-14383029 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 74

Conread position: 23-371
Cow position: chr1:57854135-57854497 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 143

Conread position: 23-371
Cow position: chr1:81454194-81454561 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 155

Conread position: 27-378
Cow position: chr1:94753808-94754139 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 191, 68

Conread position: 30-371
Cow position: chr1:81491132-81491459 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 81

Conread position: 30-372
Cow position: chr1:6968400-6968745 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 39

Conread position: 30-391
Cow position: chr1:70171816-70171464 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 105, 81

Conread position: 35-371
Cow position: chr1:97447132-97447457 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 31

Conread position: 35-375
Cow position: chr1:93391677-93392003 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 106

Conread position: 38-200
Cow position: chr1:13681337-13681176 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 24

Conread position: 44-165
Cow position: chr1:13738301-13738181 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 103

Conread position: 44-355
Cow position: chr1:89915551-89915859 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 128

Conread position: 44-370
Cow position: chr1:23921130-23920795 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 121

Conread position: 44-375
Cow position: chr1:60859909-60860254 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 190

Conread position: 48-352
Cow position: chr1:57357080-57357370 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 54-371
Cow position: chr1:39639055-39638750 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 77, 62

Conread position: 55-371
Cow position: chr1:55114379-55114681 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 57

Conread position: 58-371
Cow position: chr1:61554397-61554078 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 82

Conread position: 66-375
Cow position: chr1:94761642-94761343 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 153, 83

Conread position: 80-381
Cow position: chr1:99249495-99249791 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 211, 101

Conread position: 101-391
Cow position: chr1:24764112-24763828 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 27, 42

Conread position: 107-371
Cow position: chr1:13575196-13574943 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 48, 66

Conread position: 123-297
Cow position: chr1:91366888-91367053 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 32

Conread position: 178-370
Cow position: chr1:90845598-90845410 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 75

Conread position: 200-339
Cow position: chr1:83390764-83390621 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 201-391
Cow position: chr1:4279793-4279596 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 105, 0

Conread position: 202-356
Cow position: chr1:57893270-57893429 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 132
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 209-371
Cow position: chr1:83321683-83321518 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 80, 149

Conread position: 210-371
Cow position: chr1:13313913-13314078 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 91, 0

Conread position: 235-371
Cow position: chr1:64753277-64753417 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 124

Conread position: 260-371
Cow position: chr1:13738112-13738000 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 100

Show alignments to all cow chromosomes.