Cow genome map
Conread name: | rpgl08_f5.y1 |
Conread position: | 1-288 |
Cow position: | chr1:78259623-78259321 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 214 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 105, 144 |
Conread position: | 4-371 |
Cow position: | chr1:20807378-20807000 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 118 |
Conread position: | 5-356 |
Cow position: | chr1:33914533-33914193 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 12 |
Conread position: | 5-378 |
Cow position: | chr1:16524798-16525144 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 258 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 129, 62 |
Conread position: | 5-391 |
Cow position: | chr1:61606262-61606639 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 21 |
Conread position: | 5-391 |
Cow position: | chr1:67902504-67902125 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 18 |
Conread position: | 5-391 |
Cow position: | chr1:100397211-100397591 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 146 |
Conread position: | 6-356 |
Cow position: | chr1:80969019-80968675 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 17 |
Conread position: | 7-302 |
Cow position: | chr1:40415326-40415611 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 221 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 31, 10 |
Conread position: | 7-318 |
Cow position: | chr1:57220717-57220414 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 16 |
Conread position: | 7-346 |
Cow position: | chr1:70177922-70178269 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 16 |
Conread position: | 8-352 |
Cow position: | chr1:88973470-88973123 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 133 |
Conread position: | 8-371 |
Cow position: | chr1:13992219-13992570 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 15 |
Conread position: | 8-371 |
Cow position: | chr1:31127216-31126843 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 15 |
Conread position: | 8-375 |
Cow position: | chr1:85001110-85000753 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 24 |
Conread position: | 8-391 |
Cow position: | chr1:6309660-6309285 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 9 |
Conread position: | 8-391 |
Cow position: | chr1:7489530-7489154 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 15 |
Conread position: | 12-289 |
Cow position: | chr1:26512036-26511765 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 183 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 59, 42 |
Conread position: | 12-371 |
Cow position: | chr1:31979300-31978951 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 162 |
Conread position: | 13-201 |
Cow position: | chr1:77376729-77376912 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 147 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 13-345 |
Cow position: | chr1:94409377-94409043 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 13 |
Conread position: | 13-371 |
Cow position: | chr1:57562616-57562966 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 156 |
Conread position: | 13-371 |
Cow position: | chr1:71086680-71087031 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 10 |
Conread position: | 13-375 |
Cow position: | chr1:8142648-8143000 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 256 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 53, 41 |
Conread position: | 13-378 |
Cow position: | chr1:24684684-24684336 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 10 |
Conread position: | 13-382 |
Cow position: | chr1:89407664-89407309 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 10 |
Conread position: | 13-386 |
Cow position: | chr1:100045725-100046101 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 13 |
Conread position: | 14-352 |
Cow position: | chr1:86643385-86643059 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 13 |
Conread position: | 15-132 |
Cow position: | chr1:57893135-57893254 (view UCSC Genome Browser custom track) |
Alignm length: | 120 |
Alignm identity: | 96 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 16-283 |
Cow position: | chr1:13850947-13850688 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 196 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 123, 140 |
Conread position: | 16-371 |
Cow position: | chr1:15984069-15983730 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 11 |
Conread position: | 16-386 |
Cow position: | chr1:46388952-46389329 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 140 |
Conread position: | 17-160 |
Cow position: | chr1:82420191-82420334 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 105 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 17-320 |
Cow position: | chr1:45154017-45153711 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 230 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 78, 88 |
Conread position: | 17-348 |
Cow position: | chr1:41607093-41607440 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 160 |
Conread position: | 17-349 |
Cow position: | chr1:12521646-12521309 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 248 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 75, 86 |
Conread position: | 17-349 |
Cow position: | chr1:12569046-12568709 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 248 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 75, 86 |
Conread position: | 17-363 |
Cow position: | chr1:17092042-17092402 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 34 |
Conread position: | 17-364 |
Cow position: | chr1:92708792-92709134 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 73 |
Conread position: | 17-370 |
Cow position: | chr1:40377770-40378101 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 95 |
Conread position: | 18-238 |
Cow position: | chr1:87740887-87741100 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 162 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 48, 137 |
Conread position: | 18-355 |
Cow position: | chr1:80175232-80174901 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 129 |
Conread position: | 18-391 |
Cow position: | chr1:94390400-94390761 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 130 |
Conread position: | 19-318 |
Cow position: | chr1:8447180-8446892 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 212 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 197, 26 |
Conread position: | 19-319 |
Cow position: | chr1:10432242-10431950 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 221 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 109, 57 |
Conread position: | 19-375 |
Cow position: | chr1:23086750-23086390 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 32 |
Conread position: | 19-375 |
Cow position: | chr1:43588300-43588647 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 141 |
Conread position: | 19-378 |
Cow position: | chr1:35544706-35544356 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 33 |
Conread position: | 20-280 |
Cow position: | chr1:14169816-14169564 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 189 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 6, 128 |
Conread position: | 20-349 |
Cow position: | chr1:20264904-20264575 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 286, 148 |
Conread position: | 20-356 |
Cow position: | chr1:65187438-65187764 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 120 |
Conread position: | 20-369 |
Cow position: | chr1:24509267-24509605 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 59 |
Conread position: | 20-371 |
Cow position: | chr1:84760904-84760573 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 284, 76 |
Conread position: | 20-378 |
Cow position: | chr1:94744525-94744875 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 134 |
Conread position: | 22-194 |
Cow position: | chr1:13313675-13313851 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 130 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 107, 130 |
Conread position: | 23-362 |
Cow position: | chr1:4264984-4264630 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 20 |
Conread position: | 23-371 |
Cow position: | chr1:14383378-14383029 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 74 |
Conread position: | 23-371 |
Cow position: | chr1:57854135-57854497 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 143 |
Conread position: | 23-371 |
Cow position: | chr1:81454194-81454561 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 155 |
Conread position: | 27-378 |
Cow position: | chr1:94753808-94754139 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 243 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 191, 68 |
Conread position: | 30-371 |
Cow position: | chr1:81491132-81491459 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 271, 81 |
Conread position: | 30-372 |
Cow position: | chr1:6968400-6968745 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 39 |
Conread position: | 30-391 |
Cow position: | chr1:70171816-70171464 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 254 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 105, 81 |
Conread position: | 35-371 |
Cow position: | chr1:97447132-97447457 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 31 |
Conread position: | 35-375 |
Cow position: | chr1:93391677-93392003 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 269, 106 |
Conread position: | 38-200 |
Cow position: | chr1:13681337-13681176 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 122 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 7, 24 |
Conread position: | 44-165 |
Cow position: | chr1:13738301-13738181 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 96 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 84, 103 |
Conread position: | 44-355 |
Cow position: | chr1:89915551-89915859 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 262, 128 |
Conread position: | 44-370 |
Cow position: | chr1:23921130-23920795 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 121 |
Conread position: | 44-375 |
Cow position: | chr1:60859909-60860254 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 190 |
Conread position: | 48-352 |
Cow position: | chr1:57357080-57357370 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 0 |
Conread position: | 54-371 |
Cow position: | chr1:39639055-39638750 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 224 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 77, 62 |
Conread position: | 55-371 |
Cow position: | chr1:55114379-55114681 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 248, 57 |
Conread position: | 58-371 |
Cow position: | chr1:61554397-61554078 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 82 |
Conread position: | 66-375 |
Cow position: | chr1:94761642-94761343 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 227 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 153, 83 |
Conread position: | 80-381 |
Cow position: | chr1:99249495-99249791 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 208 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 211, 101 |
Conread position: | 101-391 |
Cow position: | chr1:24764112-24763828 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 215 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 27, 42 |
Conread position: | 107-371 |
Cow position: | chr1:13575196-13574943 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 196 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 48, 66 |
Conread position: | 123-297 |
Cow position: | chr1:91366888-91367053 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 132 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 96, 32 |
Conread position: | 178-370 |
Cow position: | chr1:90845598-90845410 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 140 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 29, 75 |
Conread position: | 200-339 |
Cow position: | chr1:83390764-83390621 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 116 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 201-391 |
Cow position: | chr1:4279793-4279596 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 152 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 202-356 |
Cow position: | chr1:57893270-57893429 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 132 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 209-371 |
Cow position: | chr1:83321683-83321518 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 133 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 80, 149 |
Conread position: | 210-371 |
Cow position: | chr1:13313913-13314078 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 136 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 91, 0 |
Conread position: | 235-371 |
Cow position: | chr1:64753277-64753417 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 111 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 60, 124 |
Conread position: | 260-371 |
Cow position: | chr1:13738112-13738000 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 95 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 47, 100 |
Show alignments to all cow chromosomes.