Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-371 |
| Cow position: | chr10:14959451-14959841 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 2-374 |
| Cow position: | chr10:3648917-3648560 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 21 |
| Conread position: | 3-167 |
| Cow position: | chr10:36559771-36559609 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 4-292 |
| Cow position: | chr10:20539422-20539700 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 4-351 |
| Cow position: | chr10:17179527-17179171 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 19 |
| Conread position: | 5-371 |
| Cow position: | chr10:29496010-29495635 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 40 |
| Conread position: | 7-371 |
| Cow position: | chr10:10223251-10223626 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 33 |
| Conread position: | 7-371 |
| Cow position: | chr10:38435134-38435473 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 16 |
| Conread position: | 7-378 |
| Cow position: | chr10:32980884-32981236 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 16 |
| Conread position: | 8-171 |
| Cow position: | chr10:23733664-23733822 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 8-319 |
| Cow position: | chr10:46080915-46080611 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 22 |
| Conread position: | 8-371 |
| Cow position: | chr10:68370469-68370821 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 8-374 |
| Cow position: | chr10:21373284-21372935 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 8-375 |
| Cow position: | chr10:19651783-19651437 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 8-391 |
| Cow position: | chr10:23765293-23765669 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 10-168 |
| Cow position: | chr10:16950714-16950870 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 11-194 |
| Cow position: | chr10:19541619-19541437 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 137 |
| Conread position: | 11-261 |
| Cow position: | chr10:1862301-1862066 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 13-356 |
| Cow position: | chr10:12538014-12537663 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 13-371 |
| Cow position: | chr10:58840349-58840702 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 13-385 |
| Cow position: | chr10:52665270-52665632 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 13-386 |
| Cow position: | chr10:62613649-62613284 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 13-391 |
| Cow position: | chr10:67566669-67567041 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 15-136 |
| Cow position: | chr10:42676362-42676242 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 16-378 |
| Cow position: | chr10:40428333-40428687 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 17-283 |
| Cow position: | chr10:47743675-47743420 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 17-296 |
| Cow position: | chr10:41305656-41305382 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 152 |
| Conread position: | 17-354 |
| Cow position: | chr10:4908843-4909195 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 156 |
| Conread position: | 17-371 |
| Cow position: | chr10:8094873-8095216 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 19-346 |
| Cow position: | chr10:52642594-52642909 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 135 |
| Conread position: | 20-351 |
| Cow position: | chr10:69685979-69685641 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 20-371 |
| Cow position: | chr10:15381260-15381601 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 23-356 |
| Cow position: | chr10:50527898-50527570 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 23-364 |
| Cow position: | chr10:63030164-63029854 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 281, 62 |
| Conread position: | 23-369 |
| Cow position: | chr10:726316-726655 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 42 |
| Conread position: | 25-371 |
| Cow position: | chr10:26023306-26023669 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 347 |
| Conread position: | 31-371 |
| Cow position: | chr10:54966706-54967020 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 34-391 |
| Cow position: | chr10:593008-592652 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 35-310 |
| Cow position: | chr10:19622109-19622378 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 139 |
| Conread position: | 35-385 |
| Cow position: | chr10:52647275-52647618 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 51 |
| Conread position: | 36-384 |
| Cow position: | chr10:69202621-69202283 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 37-378 |
| Cow position: | chr10:36474482-36474809 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 106 |
| Conread position: | 44-316 |
| Cow position: | chr10:65350083-65349817 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 44-391 |
| Cow position: | chr10:55305265-55305598 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 45-302 |
| Cow position: | chr10:28854894-28854624 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 131 |
| Conread position: | 45-385 |
| Cow position: | chr10:46395982-46395651 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 47-378 |
| Cow position: | chr10:34806804-34806485 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 50-371 |
| Cow position: | chr10:30939439-30939740 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 196, 45 |
| Conread position: | 54-371 |
| Cow position: | chr10:33445059-33445363 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 70-391 |
| Cow position: | chr10:55917184-55917491 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 151, 85 |
| Conread position: | 88-370 |
| Cow position: | chr10:5864168-5863902 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 91-371 |
| Cow position: | chr10:7762261-7761993 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 123-365 |
| Cow position: | chr10:42675586-42675350 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 125-371 |
| Cow position: | chr10:16804450-16804214 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 132-371 |
| Cow position: | chr10:63378655-63378415 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 201-371 |
| Cow position: | chr10:55932464-55932634 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 204-378 |
| Cow position: | chr10:23734058-23734232 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 205-378 |
| Cow position: | chr10:16951141-16951316 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 11, 158 |
| Conread position: | 210-371 |
| Cow position: | chr10:66427549-66427714 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 218-391 |
| Cow position: | chr10:52666818-52666643 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 89, 142 |
| Conread position: | 221-346 |
| Cow position: | chr10:29098799-29098676 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 223-391 |
| Cow position: | chr10:63475460-63475294 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 100 |
Show alignments to all cow chromosomes.