Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-186 |
| Cow position: | chr11:40644534-40644714 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 1-278 |
| Cow position: | chr11:20992519-20992253 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 147, 22 |
| Conread position: | 7-378 |
| Cow position: | chr11:32389436-32389797 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 7-391 |
| Cow position: | chr11:9754589-9754964 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 8-371 |
| Cow position: | chr11:7662107-7662487 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 8-371 |
| Cow position: | chr11:14674177-14673834 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 9 |
| Conread position: | 8-371 |
| Cow position: | chr11:30216564-30216220 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 129 |
| Conread position: | 8-391 |
| Cow position: | chr11:49604297-49603924 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 8-391 |
| Cow position: | chr11:63671677-63671304 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 8-391 |
| Cow position: | chr11:80192317-80192692 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 139 |
| Conread position: | 11-215 |
| Cow position: | chr11:1994262-1994462 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 11-371 |
| Cow position: | chr11:81347580-81347918 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 13-226 |
| Cow position: | chr11:58537845-58537636 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 13-262 |
| Cow position: | chr11:8369182-8368934 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 13-266 |
| Cow position: | chr11:61833447-61833696 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 13-352 |
| Cow position: | chr11:3161209-3160865 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 88 |
| Conread position: | 13-353 |
| Cow position: | chr11:39277177-39276842 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 10 |
| Conread position: | 13-371 |
| Cow position: | chr11:12167839-12167490 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 128 |
| Conread position: | 13-371 |
| Cow position: | chr11:66033612-66033957 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 10 |
| Conread position: | 13-371 |
| Cow position: | chr11:70888517-70888169 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 104 |
| Conread position: | 13-378 |
| Cow position: | chr11:39997646-39997294 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 16-371 |
| Cow position: | chr11:26232879-26232511 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 82 |
| Conread position: | 16-378 |
| Cow position: | chr11:896926-896572 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 17-135 |
| Cow position: | chr11:104856-104977 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 17-144 |
| Cow position: | chr11:77178156-77178283 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-168 |
| Cow position: | chr11:80336055-80335905 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 139 |
| Conread position: | 17-334 |
| Cow position: | chr11:59375035-59374731 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 117, 139 |
| Conread position: | 17-336 |
| Cow position: | chr11:63989106-63988797 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 17-371 |
| Cow position: | chr11:37334513-37334882 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 323 |
| Conread position: | 17-371 |
| Cow position: | chr11:38679657-38680020 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 17-371 |
| Cow position: | chr11:76600140-76599776 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 50 |
| Conread position: | 17-375 |
| Cow position: | chr11:14134655-14135022 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 113 |
| Conread position: | 17-378 |
| Cow position: | chr11:11684667-11685016 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 17-378 |
| Cow position: | chr11:66166038-66166389 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 276, 141 |
| Conread position: | 17-391 |
| Cow position: | chr11:32206114-32205750 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 140 |
| Conread position: | 18-371 |
| Cow position: | chr11:26305587-26305241 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 156 |
| Conread position: | 18-371 |
| Cow position: | chr11:37319195-37319564 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 148 |
| Conread position: | 19-253 |
| Cow position: | chr11:76871618-76871394 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 19-386 |
| Cow position: | chr11:86493410-86493051 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 20-275 |
| Cow position: | chr11:35576632-35576901 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 157 |
| Conread position: | 20-287 |
| Cow position: | chr11:66869969-66869710 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 113 |
| Conread position: | 20-371 |
| Cow position: | chr11:5441467-5441101 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 145 |
| Conread position: | 20-371 |
| Cow position: | chr11:30767099-30766764 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 89 |
| Conread position: | 23-278 |
| Cow position: | chr11:7399884-7399637 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 23-371 |
| Cow position: | chr11:30084601-30084247 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 27-371 |
| Cow position: | chr11:42119690-42119361 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 148 |
| Conread position: | 35-371 |
| Cow position: | chr11:40366346-40366688 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 234 |
| Conread position: | 35-391 |
| Cow position: | chr11:9739986-9740331 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 38-371 |
| Cow position: | chr11:64813757-64814104 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 40-321 |
| Cow position: | chr11:66889521-66889789 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 9 |
| Conread position: | 44-171 |
| Cow position: | chr11:63598828-63598700 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 45-371 |
| Cow position: | chr11:5292819-5292490 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 97 |
| Conread position: | 46-226 |
| Cow position: | chr11:2545721-2545905 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 90, 123 |
| Conread position: | 46-391 |
| Cow position: | chr11:72416437-72416776 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 110 |
| Conread position: | 49-325 |
| Cow position: | chr11:62409517-62409254 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 50-371 |
| Cow position: | chr11:72093210-72092903 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 242, 62 |
| Conread position: | 51-378 |
| Cow position: | chr11:14353603-14353285 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 97 |
| Conread position: | 54-371 |
| Cow position: | chr11:50649482-50649152 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 70-368 |
| Cow position: | chr11:8755014-8754738 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 222, 49 |
| Conread position: | 70-387 |
| Cow position: | chr11:70142935-70142627 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 166, 71 |
| Conread position: | 71-363 |
| Cow position: | chr11:77160969-77161274 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 127, 102 |
| Conread position: | 131-371 |
| Cow position: | chr11:63275949-63275713 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 175, 43 |
| Conread position: | 203-391 |
| Cow position: | chr11:26280401-26280210 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 158 |
| Conread position: | 203-391 |
| Cow position: | chr11:80343865-80343674 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 158 |
| Conread position: | 204-378 |
| Cow position: | chr11:3177559-3177380 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 205-345 |
| Cow position: | chr11:4678019-4678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 209-356 |
| Cow position: | chr11:79726610-79726766 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 210-351 |
| Cow position: | chr11:58537610-58537470 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 91, 113 |
| Conread position: | 210-371 |
| Cow position: | chr11:6575284-6575446 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 211-371 |
| Cow position: | chr11:77178313-77178473 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 113 |
| Conread position: | 215-371 |
| Cow position: | chr11:106215-106372 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 224-386 |
| Cow position: | chr11:61834024-61834187 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 83, 136 |
| Conread position: | 268-371 |
| Cow position: | chr11:2546066-2546171 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 271-371 |
| Cow position: | chr11:20991103-20991004 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.