Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-162 |
| Cow position: | chr12:16352879-16352718 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr12:42941304-42940940 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 1-386 |
| Cow position: | chr12:9014334-9013968 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 3-371 |
| Cow position: | chr12:41777620-41777954 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 305, 33 |
| Conread position: | 5-371 |
| Cow position: | chr12:36069549-36069172 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 12 |
| Conread position: | 5-378 |
| Cow position: | chr12:5250892-5251252 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 5-391 |
| Cow position: | chr12:27133187-27133575 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 6-355 |
| Cow position: | chr12:21677047-21676719 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 7-371 |
| Cow position: | chr12:39115422-39115059 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 8-321 |
| Cow position: | chr12:23225859-23226161 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 15 |
| Conread position: | 8-337 |
| Cow position: | chr12:17690922-17691238 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 12-370 |
| Cow position: | chr12:21268237-21268589 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 11 |
| Conread position: | 12-371 |
| Cow position: | chr12:13634447-13634811 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 158, 307 |
| Conread position: | 13-200 |
| Cow position: | chr12:5982623-5982437 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 173, 153 |
| Conread position: | 13-278 |
| Cow position: | chr12:26173909-26174188 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 155 |
| Conread position: | 13-370 |
| Cow position: | chr12:42786477-42786130 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 13-371 |
| Cow position: | chr12:39177902-39177572 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 16-382 |
| Cow position: | chr12:36251269-36251624 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 17-305 |
| Cow position: | chr12:32865513-32865811 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 53 |
| Conread position: | 17-371 |
| Cow position: | chr12:2004889-2005241 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 17-372 |
| Cow position: | chr12:30531521-30531869 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 161 |
| Conread position: | 17-386 |
| Cow position: | chr12:15073145-15072769 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 163 |
| Conread position: | 18-364 |
| Cow position: | chr12:20225314-20225637 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 19-277 |
| Cow position: | chr12:10853314-10853564 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 115, 131 |
| Conread position: | 19-374 |
| Cow position: | chr12:30232106-30231755 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 19-374 |
| Cow position: | chr12:34598137-34597791 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 127 |
| Conread position: | 19-375 |
| Cow position: | chr12:45704213-45703849 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 133 |
| Conread position: | 20-370 |
| Cow position: | chr12:26292926-26292579 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 148 |
| Conread position: | 20-376 |
| Cow position: | chr12:15131495-15131870 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 358 |
| Conread position: | 27-391 |
| Cow position: | chr12:8963385-8963738 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 74 |
| Conread position: | 34-371 |
| Cow position: | chr12:16082073-16081725 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 35-371 |
| Cow position: | chr12:30446690-30446360 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 115 |
| Conread position: | 44-346 |
| Cow position: | chr12:6932012-6931699 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 157, 87 |
| Conread position: | 45-346 |
| Cow position: | chr12:8493813-8494110 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 123 |
| Conread position: | 45-371 |
| Cow position: | chr12:4146479-4146166 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 93 |
| Conread position: | 46-369 |
| Cow position: | chr12:9276733-9277045 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 54-371 |
| Cow position: | chr12:16908998-16908673 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 58 |
| Conread position: | 54-371 |
| Cow position: | chr12:39937158-39937459 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 55-356 |
| Cow position: | chr12:26214191-26213893 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 101-371 |
| Cow position: | chr12:11212988-11213248 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 31 |
| Conread position: | 116-370 |
| Cow position: | chr12:34395373-34395617 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 183, 21 |
| Conread position: | 143-371 |
| Cow position: | chr12:34465335-34465116 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 168-371 |
| Cow position: | chr12:31608896-31608695 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 8 |
| Conread position: | 178-352 |
| Cow position: | chr12:15365780-15365606 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 190-386 |
| Cow position: | chr12:6689648-6689443 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 202-346 |
| Cow position: | chr12:16352537-16352395 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 210-370 |
| Cow position: | chr12:14958193-14958357 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 210-371 |
| Cow position: | chr12:31871124-31870960 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 150 |
| Conread position: | 233-371 |
| Cow position: | chr12:39551765-39551906 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 245-371 |
| Cow position: | chr12:5982364-5982240 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.