Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-169 |
| Cow position: | chr13:48946291-48946126 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 2-356 |
| Cow position: | chr13:34720516-34720177 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 145 |
| Conread position: | 5-386 |
| Cow position: | chr13:12986431-12986058 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 5-391 |
| Cow position: | chr13:50187996-50188362 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 6-347 |
| Cow position: | chr13:20460448-20460802 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 162 |
| Conread position: | 6-371 |
| Cow position: | chr13:17935911-17935552 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 17 |
| Conread position: | 7-203 |
| Cow position: | chr13:43639946-43639752 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 122, 16 |
| Conread position: | 7-347 |
| Cow position: | chr13:25785697-25786028 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 16 |
| Conread position: | 7-356 |
| Cow position: | chr13:56232164-56231802 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 10 |
| Conread position: | 7-371 |
| Cow position: | chr13:6334085-6333737 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 7-371 |
| Cow position: | chr13:27228397-27228059 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 294, 16 |
| Conread position: | 8-378 |
| Cow position: | chr13:15853246-15853606 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 18 |
| Conread position: | 8-386 |
| Cow position: | chr13:27885457-27885083 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 13-347 |
| Cow position: | chr13:17130026-17129679 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 13-371 |
| Cow position: | chr13:31437712-31437370 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 149 |
| Conread position: | 13-371 |
| Cow position: | chr13:48204212-48203855 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 13-371 |
| Cow position: | chr13:55382843-55383205 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 183, 13 |
| Conread position: | 14-349 |
| Cow position: | chr13:26366812-26367162 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 14-371 |
| Cow position: | chr13:8643594-8643970 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 15-374 |
| Cow position: | chr13:14610531-14610880 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 16 |
| Conread position: | 16-338 |
| Cow position: | chr13:26307587-26307899 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 17-350 |
| Cow position: | chr13:16810380-16810052 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 158 |
| Conread position: | 17-371 |
| Cow position: | chr13:20630905-20630562 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 151 |
| Conread position: | 17-371 |
| Cow position: | chr13:41201260-41201622 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 120 |
| Conread position: | 17-371 |
| Cow position: | chr13:44433540-44433908 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 151 |
| Conread position: | 17-386 |
| Cow position: | chr13:41355957-41356314 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 114, 94 |
| Conread position: | 20-356 |
| Cow position: | chr13:53827052-53826732 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 23-336 |
| Cow position: | chr13:22944406-22944716 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 129 |
| Conread position: | 23-356 |
| Cow position: | chr13:20268348-20268010 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 47 |
| Conread position: | 23-371 |
| Cow position: | chr13:25343393-25343043 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 162 |
| Conread position: | 23-378 |
| Cow position: | chr13:33247058-33246734 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 126 |
| Conread position: | 24-341 |
| Cow position: | chr13:51135942-51135615 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 30-368 |
| Cow position: | chr13:19327739-19328067 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 56 |
| Conread position: | 30-371 |
| Cow position: | chr13:50205497-50205830 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 104, 60 |
| Conread position: | 30-371 |
| Cow position: | chr13:55952551-55952891 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 35-352 |
| Cow position: | chr13:13498679-13498368 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 143 |
| Conread position: | 37-371 |
| Cow position: | chr13:38108500-38108808 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 44-202 |
| Cow position: | chr13:51091467-51091310 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 44-207 |
| Cow position: | chr13:6350264-6350096 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 44-347 |
| Cow position: | chr13:25347653-25347352 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 64-371 |
| Cow position: | chr13:56227766-56227444 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 82 |
| Conread position: | 86-336 |
| Cow position: | chr13:34470454-34470694 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 133, 60 |
| Conread position: | 125-382 |
| Cow position: | chr13:59434569-59434326 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 202-359 |
| Cow position: | chr13:56863692-56863536 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 209-371 |
| Cow position: | chr13:42649711-42649547 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 149 |
| Conread position: | 210-363 |
| Cow position: | chr13:6350061-6349908 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 113 |
| Conread position: | 210-370 |
| Cow position: | chr13:51091280-51091120 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 8 |
Show alignments to all cow chromosomes.