Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 5-370 |
| Cow position: | chr15:16432184-16431834 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 6-371 |
| Cow position: | chr15:14418551-14418171 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 6-389 |
| Cow position: | chr15:34170799-34170419 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 17 |
| Conread position: | 7-229 |
| Cow position: | chr15:51240917-51241136 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 7-371 |
| Cow position: | chr15:22548505-22548167 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-129 |
| Cow position: | chr15:29657519-29657400 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 18 |
| Conread position: | 8-320 |
| Cow position: | chr15:675260-674955 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 25 |
| Conread position: | 8-349 |
| Cow position: | chr15:22516846-22516512 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 8-363 |
| Cow position: | chr15:44997606-44997976 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 15 |
| Conread position: | 8-366 |
| Cow position: | chr15:14470569-14470927 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 8-371 |
| Cow position: | chr15:6446992-6447372 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 8-371 |
| Cow position: | chr15:45696135-45696505 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 115 |
| Conread position: | 8-378 |
| Cow position: | chr15:8438808-8439164 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 9 |
| Conread position: | 8-379 |
| Cow position: | chr15:48107252-48107616 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 8-386 |
| Cow position: | chr15:53189191-53189554 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 8-391 |
| Cow position: | chr15:22579620-22579247 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 11-205 |
| Cow position: | chr15:17189510-17189692 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 11-364 |
| Cow position: | chr15:25466551-25466189 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 12 |
| Conread position: | 11-371 |
| Cow position: | chr15:49129959-49130330 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 13-371 |
| Cow position: | chr15:8439284-8439656 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 13-371 |
| Cow position: | chr15:45509379-45509735 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 13-386 |
| Cow position: | chr15:45003060-45002705 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 122, 98 |
| Conread position: | 13-390 |
| Cow position: | chr15:15632423-15632811 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 10 |
| Conread position: | 15-171 |
| Cow position: | chr15:42404140-42403983 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 16-356 |
| Cow position: | chr15:47622955-47623290 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 28 |
| Conread position: | 17-354 |
| Cow position: | chr15:29882997-29882668 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 133 |
| Conread position: | 17-374 |
| Cow position: | chr15:42660186-42659843 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 156 |
| Conread position: | 18-381 |
| Cow position: | chr15:13994936-13994576 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 138 |
| Conread position: | 18-385 |
| Cow position: | chr15:37110076-37110436 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 138 |
| Conread position: | 18-391 |
| Cow position: | chr15:19935031-19934672 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 91 |
| Conread position: | 19-264 |
| Cow position: | chr15:870496-870254 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 217, 146 |
| Conread position: | 19-271 |
| Cow position: | chr15:10609872-10610113 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 109, 92 |
| Conread position: | 19-305 |
| Cow position: | chr15:37975225-37975502 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 90 |
| Conread position: | 19-378 |
| Cow position: | chr15:12799148-12799496 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 128 |
| Conread position: | 20-320 |
| Cow position: | chr15:29605783-29605490 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 23-371 |
| Cow position: | chr15:19728565-19728917 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 20 |
| Conread position: | 23-389 |
| Cow position: | chr15:18212640-18213008 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 27-360 |
| Cow position: | chr15:50442402-50442052 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 149 |
| Conread position: | 32-371 |
| Cow position: | chr15:35449291-35449635 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 141 |
| Conread position: | 35-346 |
| Cow position: | chr15:11759594-11759915 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 103 |
| Conread position: | 36-331 |
| Cow position: | chr15:42833451-42833731 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 36-371 |
| Cow position: | chr15:26171298-26170962 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 45-391 |
| Cow position: | chr15:22739881-22739556 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 109 |
| Conread position: | 46-371 |
| Cow position: | chr15:1304730-1304389 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 90, 141 |
| Conread position: | 46-391 |
| Cow position: | chr15:5844665-5845002 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 47-292 |
| Cow position: | chr15:22893093-22892855 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 87, 122 |
| Conread position: | 54-287 |
| Cow position: | chr15:33464228-33464454 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 223, 121 |
| Conread position: | 58-370 |
| Cow position: | chr15:33611495-33611829 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 66-371 |
| Cow position: | chr15:32659789-32660112 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 130, 107 |
| Conread position: | 101-378 |
| Cow position: | chr15:24399902-24399631 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 104-371 |
| Cow position: | chr15:3054559-3054321 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 116-333 |
| Cow position: | chr15:4999845-5000056 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 116-391 |
| Cow position: | chr15:18280343-18280075 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 124-391 |
| Cow position: | chr15:29656738-29656472 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 202-371 |
| Cow position: | chr15:42551678-42551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 210-349 |
| Cow position: | chr15:17189732-17189866 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 210-362 |
| Cow position: | chr15:51241138-51241293 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 75, 148 |
| Conread position: | 216-364 |
| Cow position: | chr15:17005471-17005325 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 5 |
| Conread position: | 219-374 |
| Cow position: | chr15:18675609-18675764 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 233-371 |
| Cow position: | chr15:20128654-20128795 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 235-375 |
| Cow position: | chr15:50547827-50547682 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 129 |
| Conread position: | 268-371 |
| Cow position: | chr15:33464633-33464738 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 86 |
Show alignments to all cow chromosomes.