Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 2-371 |
| Cow position: | chr16:33435399-33435770 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 3-204 |
| Cow position: | chr16:10179261-10179055 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 3-346 |
| Cow position: | chr16:34027920-34028248 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-277 |
| Cow position: | chr16:11764108-11764367 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 4-296 |
| Cow position: | chr16:15257913-15258199 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 4-371 |
| Cow position: | chr16:40502024-40501666 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 6-277 |
| Cow position: | chr16:14180553-14180304 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 6-279 |
| Cow position: | chr16:35445620-35445891 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 125, 166 |
| Conread position: | 6-391 |
| Cow position: | chr16:48799694-48800061 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 210, 11 |
| Conread position: | 7-292 |
| Cow position: | chr16:31128606-31128885 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 7-339 |
| Cow position: | chr16:50231338-50231014 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 139 |
| Conread position: | 7-368 |
| Cow position: | chr16:21725595-21725947 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 7-371 |
| Cow position: | chr16:37100497-37100866 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 19 |
| Conread position: | 8-168 |
| Cow position: | chr16:7433351-7433510 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 8-266 |
| Cow position: | chr16:56210388-56210138 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 8-345 |
| Cow position: | chr16:33710428-33710756 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 8-371 |
| Cow position: | chr16:17163102-17162727 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 8-371 |
| Cow position: | chr16:33377708-33377336 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 15 |
| Conread position: | 8-391 |
| Cow position: | chr16:40415936-40415558 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 11-371 |
| Cow position: | chr16:40521758-40522129 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 12 |
| Conread position: | 12-349 |
| Cow position: | chr16:45161117-45161440 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 276, 19 |
| Conread position: | 13-166 |
| Cow position: | chr16:49910439-49910594 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 13-171 |
| Cow position: | chr16:47364954-47365111 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 13-334 |
| Cow position: | chr16:40511664-40511344 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 128 |
| Conread position: | 13-356 |
| Cow position: | chr16:23923925-23923591 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 13-372 |
| Cow position: | chr16:11484414-11484767 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 10 |
| Conread position: | 13-391 |
| Cow position: | chr16:6724949-6725317 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 14-371 |
| Cow position: | chr16:13513114-13513485 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 13 |
| Conread position: | 15-145 |
| Cow position: | chr16:10763951-10764083 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 16-149 |
| Cow position: | chr16:5785224-5785090 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 16-364 |
| Cow position: | chr16:50507803-50508148 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 16-378 |
| Cow position: | chr16:35447066-35447412 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 16-378 |
| Cow position: | chr16:55127350-55127002 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 16-382 |
| Cow position: | chr16:23385514-23385873 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 16-385 |
| Cow position: | chr16:55132293-55132651 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 84 |
| Conread position: | 16-391 |
| Cow position: | chr16:17734643-17734289 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 96 |
| Conread position: | 17-363 |
| Cow position: | chr16:12093241-12092894 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 151 |
| Conread position: | 17-371 |
| Cow position: | chr16:4141691-4141334 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 17-371 |
| Cow position: | chr16:14182958-14182618 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 18-294 |
| Cow position: | chr16:16724496-16724774 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 167, 12 |
| Conread position: | 18-305 |
| Cow position: | chr16:33903383-33903100 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 19-183 |
| Cow position: | chr16:51083695-51083858 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 20-348 |
| Cow position: | chr16:33439181-33439499 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 50 |
| Conread position: | 20-371 |
| Cow position: | chr16:43860863-43861207 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 118 |
| Conread position: | 20-376 |
| Cow position: | chr16:48895553-48895914 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 50 |
| Conread position: | 22-368 |
| Cow position: | chr16:44460202-44460560 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 15 |
| Conread position: | 23-371 |
| Cow position: | chr16:411963-412315 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 152 |
| Conread position: | 23-375 |
| Cow position: | chr16:24586568-24586919 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 175 |
| Conread position: | 35-371 |
| Cow position: | chr16:10933601-10933294 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 256, 81 |
| Conread position: | 35-388 |
| Cow position: | chr16:571652-571280 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 197 |
| Conread position: | 46-294 |
| Cow position: | chr16:19941996-19942235 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 55-371 |
| Cow position: | chr16:10669681-10669353 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 109 |
| Conread position: | 194-363 |
| Cow position: | chr16:10179046-10178876 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 144 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 202-321 |
| Cow position: | chr16:33531464-33531345 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 202-371 |
| Cow position: | chr16:3159995-3160161 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 203-332 |
| Cow position: | chr16:10764115-10764248 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 209-375 |
| Cow position: | chr16:49910811-49910976 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 233-371 |
| Cow position: | chr16:19262960-19263097 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 63, 91 |
| Conread position: | 233-371 |
| Cow position: | chr16:35415419-35415560 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 235-370 |
| Cow position: | chr16:7433532-7433664 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 243-371 |
| Cow position: | chr16:47366371-47366497 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 249-371 |
| Cow position: | chr16:22243807-22243685 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 249-371 |
| Cow position: | chr16:56209796-56209671 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 106 |
Show alignments to all cow chromosomes.