Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-235 |
| Cow position: | chr17:6992530-6992750 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 1-375 |
| Cow position: | chr17:42793644-42794034 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 340 |
| Conread position: | 4-164 |
| Cow position: | chr17:36036212-36036375 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 4-371 |
| Cow position: | chr17:21920606-21920961 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 18 |
| Conread position: | 4-391 |
| Cow position: | chr17:30681036-30681400 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 22 |
| Conread position: | 7-324 |
| Cow position: | chr17:1903265-1903575 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 129, 16 |
| Conread position: | 7-347 |
| Cow position: | chr17:11076184-11075851 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 16 |
| Conread position: | 8-305 |
| Cow position: | chr17:41410390-41410088 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 8-371 |
| Cow position: | chr17:21343059-21342685 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 15 |
| Conread position: | 8-371 |
| Cow position: | chr17:22460919-22460544 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 15 |
| Conread position: | 8-371 |
| Cow position: | chr17:25650429-25650794 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 11-363 |
| Cow position: | chr17:23467965-23468331 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 11-371 |
| Cow position: | chr17:10851775-10851432 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 17 |
| Conread position: | 13-375 |
| Cow position: | chr17:34377914-34377561 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 17 |
| Conread position: | 14-226 |
| Cow position: | chr17:10548876-10549077 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 17-357 |
| Cow position: | chr17:5718945-5719271 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 17-371 |
| Cow position: | chr17:34040645-34041002 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 151 |
| Conread position: | 19-238 |
| Cow position: | chr17:24998080-24998290 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 19-328 |
| Cow position: | chr17:11292814-11293118 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 20-370 |
| Cow position: | chr17:24566636-24566298 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 23-226 |
| Cow position: | chr17:18597441-18597243 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 23-381 |
| Cow position: | chr17:24993879-24993540 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 117 |
| Conread position: | 27-360 |
| Cow position: | chr17:36204740-36205067 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 37-363 |
| Cow position: | chr17:35129554-35129875 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 50-371 |
| Cow position: | chr17:23906919-23907229 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 54-371 |
| Cow position: | chr17:4735845-4736149 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 201, 62 |
| Conread position: | 54-371 |
| Cow position: | chr17:5820876-5821211 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 87 |
| Conread position: | 56-390 |
| Cow position: | chr17:45798859-45798547 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 250, 62 |
| Conread position: | 71-335 |
| Cow position: | chr17:44691961-44691696 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 104-371 |
| Cow position: | chr17:16354978-16354728 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 187, 36 |
| Conread position: | 121-375 |
| Cow position: | chr17:6759461-6759221 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 186, 20 |
| Conread position: | 132-372 |
| Cow position: | chr17:6002929-6003165 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 202-375 |
| Cow position: | chr17:25103770-25103598 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 88, 124 |
| Conread position: | 206-374 |
| Cow position: | chr17:18596988-18597153 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 100, 46 |
| Conread position: | 209-371 |
| Cow position: | chr17:38043656-38043820 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 149 |
| Conread position: | 210-371 |
| Cow position: | chr17:23463600-23463768 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 233-371 |
| Cow position: | chr17:15919554-15919419 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 241-371 |
| Cow position: | chr17:24860673-24860540 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 246-387 |
| Cow position: | chr17:24862462-24862316 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 105 |
Show alignments to all cow chromosomes.