Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 5-371 |
| Cow position: | chr18:29884584-29884952 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 18 |
| Conread position: | 5-372 |
| Cow position: | chr18:4699140-4699519 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 6-391 |
| Cow position: | chr18:54128583-54128205 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 7-349 |
| Cow position: | chr18:30228311-30228664 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 7-372 |
| Cow position: | chr18:24799307-24798929 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 10 |
| Conread position: | 7-391 |
| Cow position: | chr18:15807199-15807575 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 8-266 |
| Cow position: | chr18:32199081-32199339 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 8-318 |
| Cow position: | chr18:46639536-46639830 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 8-371 |
| Cow position: | chr18:25700984-25700630 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 8-371 |
| Cow position: | chr18:51804283-51803913 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 8-391 |
| Cow position: | chr18:15946202-15946572 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 15-282 |
| Cow position: | chr18:49879528-49879785 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 16-391 |
| Cow position: | chr18:9257657-9257288 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 16-391 |
| Cow position: | chr18:49386107-49386475 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 130 |
| Conread position: | 17-304 |
| Cow position: | chr18:44136914-44137207 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 17-371 |
| Cow position: | chr18:46883053-46883425 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 17-371 |
| Cow position: | chr18:51780187-51779827 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 158 |
| Conread position: | 17-375 |
| Cow position: | chr18:35087331-35086981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 111 |
| Conread position: | 18-338 |
| Cow position: | chr18:3689670-3689352 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 18-386 |
| Cow position: | chr18:52440008-52440365 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 18-391 |
| Cow position: | chr18:25694507-25694877 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 104 |
| Conread position: | 19-391 |
| Cow position: | chr18:37078938-37078571 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 20-278 |
| Cow position: | chr18:43794662-43794418 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 114, 127 |
| Conread position: | 20-371 |
| Cow position: | chr18:4176670-4177004 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 20-391 |
| Cow position: | chr18:24635794-24636172 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 77, 146 |
| Conread position: | 23-379 |
| Cow position: | chr18:9018011-9017661 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 23-381 |
| Cow position: | chr18:46864747-46865124 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 153 |
| Conread position: | 27-382 |
| Cow position: | chr18:40702108-40701756 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 121 |
| Conread position: | 33-371 |
| Cow position: | chr18:25694489-25694156 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 35-349 |
| Cow position: | chr18:25670569-25670237 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 140 |
| Conread position: | 45-391 |
| Cow position: | chr18:8284157-8283817 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 50-374 |
| Cow position: | chr18:12779331-12779001 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 137, 92 |
| Conread position: | 51-334 |
| Cow position: | chr18:8254695-8254969 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 106 |
| Conread position: | 69-378 |
| Cow position: | chr18:47293730-47294032 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 76-371 |
| Cow position: | chr18:13788525-13788234 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 101 |
| Conread position: | 101-356 |
| Cow position: | chr18:54063786-54063538 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 209-376 |
| Cow position: | chr18:54933110-54932948 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 103 |
| Conread position: | 210-355 |
| Cow position: | chr18:51409921-51410072 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 210-369 |
| Cow position: | chr18:11268672-11268511 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 88, 147 |
| Conread position: | 245-371 |
| Cow position: | chr18:48310375-48310499 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 78 |
Show alignments to all cow chromosomes.