Cow genome map

Conread name: rpgl08_f5.y1

Conread position: 5-257
Cow position: chr2:47921642-47921398 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 129, 18

Conread position: 5-332
Cow position: chr2:20909036-20909354 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 18

Conread position: 7-171
Cow position: chr2:70468129-70467969 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 127, 19

Conread position: 7-371
Cow position: chr2:60318453-60318792 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 251
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 136, 16

Conread position: 7-371
Cow position: chr2:86326767-86327142 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 127, 41

Conread position: 7-386
Cow position: chr2:82293495-82293868 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 149

Conread position: 8-199
Cow position: chr2:68350397-68350209 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 9

Conread position: 8-348
Cow position: chr2:9393498-9393824 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 126, 9

Conread position: 8-349
Cow position: chr2:85010152-85009802 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 15

Conread position: 8-369
Cow position: chr2:81186159-81185790 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 19

Conread position: 8-370
Cow position: chr2:32892743-32893092 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 15

Conread position: 8-370
Cow position: chr2:45927486-45927867 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 167

Conread position: 8-371
Cow position: chr2:9946577-9946945 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 160

Conread position: 8-371
Cow position: chr2:41778814-41779183 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 15

Conread position: 8-378
Cow position: chr2:1479519-1479875 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 15

Conread position: 8-378
Cow position: chr2:68157404-68157751 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 18

Conread position: 8-386
Cow position: chr2:33630464-33630833 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 18

Conread position: 8-391
Cow position: chr2:12693450-12693075 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 18

Conread position: 11-300
Cow position: chr2:37080092-37079795 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 128

Conread position: 11-324
Cow position: chr2:46204708-46205029 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 12

Conread position: 11-378
Cow position: chr2:56300743-56300389 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 6

Conread position: 13-141
Cow position: chr2:958733-958606 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 10

Conread position: 13-282
Cow position: chr2:3626762-3627031 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 10

Conread position: 13-352
Cow position: chr2:29192071-29191727 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 187, 27

Conread position: 13-352
Cow position: chr2:35971288-35971636 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 9

Conread position: 13-372
Cow position: chr2:34293189-34292837 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 10

Conread position: 13-386
Cow position: chr2:44683981-44683617 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 13

Conread position: 15-145
Cow position: chr2:29418824-29418693 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 110

Conread position: 15-347
Cow position: chr2:69130920-69131271 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 170

Conread position: 15-371
Cow position: chr2:39255477-39255131 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 123

Conread position: 16-292
Cow position: chr2:82294067-82294347 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 112, 140

Conread position: 16-364
Cow position: chr2:40853515-40853175 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 160, 55

Conread position: 16-378
Cow position: chr2:44979617-44979963 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 41

Conread position: 16-391
Cow position: chr2:44547105-44546738 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 19

Conread position: 17-121
Cow position: chr2:65720592-65720696 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 17-125
Cow position: chr2:46568094-46567987 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 17-279
Cow position: chr2:39878372-39878111 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 159, 46

Conread position: 17-306
Cow position: chr2:83889761-83889479 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 111, 137

Conread position: 17-370
Cow position: chr2:21336703-21336369 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 68

Conread position: 17-371
Cow position: chr2:46564836-46565180 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 170

Conread position: 17-371
Cow position: chr2:69133622-69133959 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 151

Conread position: 18-226
Cow position: chr2:85383127-85383329 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 140, 135

Conread position: 18-339
Cow position: chr2:45110271-45109953 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 153

Conread position: 18-375
Cow position: chr2:20910562-20910214 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 128

Conread position: 18-391
Cow position: chr2:82301223-82301589 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 138

Conread position: 19-279
Cow position: chr2:44687552-44687804 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 115, 128

Conread position: 19-287
Cow position: chr2:86430759-86430506 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 32, 122

Conread position: 19-291
Cow position: chr2:3472891-3473155 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 109, 128

Conread position: 19-369
Cow position: chr2:49908997-49909322 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 267, 33

Conread position: 19-371
Cow position: chr2:35453581-35453224 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 35

Conread position: 19-371
Cow position: chr2:66671330-66670966 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 113

Conread position: 19-372
Cow position: chr2:15263401-15263763 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 77

Conread position: 19-374
Cow position: chr2:28918577-28918922 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 42

Conread position: 19-374
Cow position: chr2:35984376-35984735 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 78

Conread position: 19-378
Cow position: chr2:40299469-40299824 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 131

Conread position: 19-378
Cow position: chr2:43334593-43334946 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 19-389
Cow position: chr2:12767908-12768270 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 32

Conread position: 20-371
Cow position: chr2:47149739-47150078 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 75

Conread position: 21-371
Cow position: chr2:23043258-23043600 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 154

Conread position: 22-297
Cow position: chr2:45933924-45934193 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 116

Conread position: 23-348
Cow position: chr2:36417469-36417150 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 139

Conread position: 23-371
Cow position: chr2:25376025-25375688 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 151

Conread position: 23-371
Cow position: chr2:68427105-68426745 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 24

Conread position: 27-270
Cow position: chr2:47384286-47384050 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 107, 127

Conread position: 30-375
Cow position: chr2:36855487-36855149 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 74

Conread position: 35-366
Cow position: chr2:80804750-80805079 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 23

Conread position: 36-352
Cow position: chr2:50965301-50965003 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 114, 36

Conread position: 44-371
Cow position: chr2:24509059-24508738 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 47

Conread position: 45-387
Cow position: chr2:28916295-28915980 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 176, 52

Conread position: 50-287
Cow position: chr2:83144591-83144834 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 137, 103

Conread position: 50-328
Cow position: chr2:64308517-64308229 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 218, 15

Conread position: 58-371
Cow position: chr2:44972813-44972516 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 114

Conread position: 73-203
Cow position: chr2:44039957-44039829 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 85-374
Cow position: chr2:7316957-7316676 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 71

Conread position: 111-387
Cow position: chr2:40021014-40021280 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 178, 77

Conread position: 114-371
Cow position: chr2:37366266-37366015 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 36

Conread position: 121-371
Cow position: chr2:35978558-35978792 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 88, 9

Conread position: 122-391
Cow position: chr2:64657844-64658107 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 12, 34

Conread position: 195-371
Cow position: chr2:46566994-46567168 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 69, 60

Conread position: 203-386
Cow position: chr2:19741284-19741098 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 18, 158

Conread position: 203-391
Cow position: chr2:3472357-3472548 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 158

Conread position: 203-391
Cow position: chr2:47554278-47554088 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 28

Conread position: 207-372
Cow position: chr2:29418667-29418499 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 151

Conread position: 212-363
Cow position: chr2:12565646-12565802 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 219-386
Cow position: chr2:68349986-68349817 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 141

Conread position: 224-369
Cow position: chr2:46566809-46566659 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 106

Conread position: 233-370
Cow position: chr2:41586119-41586258 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 125

Conread position: 233-371
Cow position: chr2:16800024-16800165 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 125

Conread position: 233-371
Cow position: chr2:46772751-46772610 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 125

Conread position: 233-375
Cow position: chr2:7293367-7293222 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 125

Conread position: 245-386
Cow position: chr2:70467936-70467792 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 116

Conread position: 267-371
Cow position: chr2:39871623-39871520 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.