Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 4-267 |
| Cow position: | chr20:32949437-32949183 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 5-344 |
| Cow position: | chr20:8964474-8964825 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 101 |
| Conread position: | 6-290 |
| Cow position: | chr20:3057722-3057981 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 7-196 |
| Cow position: | chr20:31430433-31430622 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 159, 16 |
| Conread position: | 8-226 |
| Cow position: | chr20:8298285-8298070 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 196, 15 |
| Conread position: | 8-277 |
| Cow position: | chr20:42801061-42800796 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 8-370 |
| Cow position: | chr20:10508570-10508227 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 76 |
| Conread position: | 8-375 |
| Cow position: | chr20:17673775-17674135 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 8-375 |
| Cow position: | chr20:40526997-40527354 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 11-391 |
| Cow position: | chr20:35639266-35639663 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 106, 98 |
| Conread position: | 13-207 |
| Cow position: | chr20:35181293-35181489 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 13-363 |
| Cow position: | chr20:33773456-33773093 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 13-371 |
| Cow position: | chr20:13080334-13079962 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 13-386 |
| Cow position: | chr20:3532186-3531821 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 14-370 |
| Cow position: | chr20:3076827-3077166 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 15-371 |
| Cow position: | chr20:37058933-37059302 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 15 |
| Conread position: | 16-291 |
| Cow position: | chr20:28820051-28820315 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 112, 93 |
| Conread position: | 16-347 |
| Cow position: | chr20:19030968-19030633 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 125 |
| Conread position: | 16-371 |
| Cow position: | chr20:24340552-24340192 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 28 |
| Conread position: | 17-371 |
| Cow position: | chr20:23921316-23921651 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 120 |
| Conread position: | 18-340 |
| Cow position: | chr20:2226835-2227157 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 129 |
| Conread position: | 18-363 |
| Cow position: | chr20:36325696-36326033 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 18-382 |
| Cow position: | chr20:31439763-31440115 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 36 |
| Conread position: | 19-370 |
| Cow position: | chr20:1511979-1511652 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 78 |
| Conread position: | 19-391 |
| Cow position: | chr20:28137935-28137578 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 198, 118 |
| Conread position: | 20-371 |
| Cow position: | chr20:41157114-41157477 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 121 |
| Conread position: | 20-391 |
| Cow position: | chr20:33711278-33711634 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 114, 53 |
| Conread position: | 23-352 |
| Cow position: | chr20:35434369-35434679 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 152 |
| Conread position: | 23-371 |
| Cow position: | chr20:649605-649267 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 106 |
| Conread position: | 30-192 |
| Cow position: | chr20:2210520-2210679 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 30-349 |
| Cow position: | chr20:13083098-13083410 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 111 |
| Conread position: | 32-356 |
| Cow position: | chr20:22412558-22412868 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 106 |
| Conread position: | 34-168 |
| Cow position: | chr20:38032666-38032532 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-370 |
| Cow position: | chr20:37910709-37911032 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 51-328 |
| Cow position: | chr20:36663896-36663625 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 69-360 |
| Cow position: | chr20:22682298-22682023 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 70-375 |
| Cow position: | chr20:33667843-33667553 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 71-371 |
| Cow position: | chr20:13282473-13282169 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 66 |
| Conread position: | 79-371 |
| Cow position: | chr20:35962345-35962056 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 81-363 |
| Cow position: | chr20:38726636-38726368 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 83-275 |
| Cow position: | chr20:42736770-42736588 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 138-371 |
| Cow position: | chr20:40203895-40204138 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 140-371 |
| Cow position: | chr20:19490760-19490544 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 148, 33 |
| Conread position: | 195-371 |
| Cow position: | chr20:35181506-35181678 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 198-352 |
| Cow position: | chr20:31431105-31431258 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 106, 126 |
| Conread position: | 201-374 |
| Cow position: | chr20:35251498-35251666 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 210-356 |
| Cow position: | chr20:25039136-25038989 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 215-371 |
| Cow position: | chr20:8298061-8297904 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 145 |
| Conread position: | 218-364 |
| Cow position: | chr20:13124838-13124689 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.