Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-159 |
| Cow position: | chr21:8375020-8375177 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 3-386 |
| Cow position: | chr21:41413038-41413408 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 3-391 |
| Cow position: | chr21:3967082-3966710 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 5-375 |
| Cow position: | chr21:19866556-19866918 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 6-345 |
| Cow position: | chr21:2802378-2802721 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 6-352 |
| Cow position: | chr21:18485497-18485837 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 6-371 |
| Cow position: | chr21:41070877-41070488 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 8-371 |
| Cow position: | chr21:19092273-19092619 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 8-371 |
| Cow position: | chr21:22520239-22520594 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 164 |
| Conread position: | 8-371 |
| Cow position: | chr21:28768637-28768273 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 15 |
| Conread position: | 8-378 |
| Cow position: | chr21:6729561-6729201 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 8-386 |
| Cow position: | chr21:32404947-32404572 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 11-171 |
| Cow position: | chr21:34957298-34957457 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 13-202 |
| Cow position: | chr21:10555908-10556095 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 13-302 |
| Cow position: | chr21:10237872-10237579 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 10 |
| Conread position: | 15-346 |
| Cow position: | chr21:12208298-12208641 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 16-391 |
| Cow position: | chr21:24935962-24935594 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 138 |
| Conread position: | 17-134 |
| Cow position: | chr21:18171523-18171638 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 17-160 |
| Cow position: | chr21:10275985-10275842 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 130, 137 |
| Conread position: | 17-199 |
| Cow position: | chr21:42180529-42180351 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 17-202 |
| Cow position: | chr21:1500657-1500475 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 17-300 |
| Cow position: | chr21:36209686-36209962 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 17-375 |
| Cow position: | chr21:23236438-23236788 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 18-292 |
| Cow position: | chr21:41526991-41526728 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 19-235 |
| Cow position: | chr21:20015766-20015982 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 19-374 |
| Cow position: | chr21:21407425-21407794 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 19-379 |
| Cow position: | chr21:42227649-42227997 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 20-265 |
| Cow position: | chr21:10171110-10170854 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 111, 156 |
| Conread position: | 20-352 |
| Cow position: | chr21:47356262-47356606 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 118 |
| Conread position: | 23-371 |
| Cow position: | chr21:13861308-13860970 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 23 |
| Conread position: | 23-372 |
| Cow position: | chr21:18571585-18571929 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 156 |
| Conread position: | 30-378 |
| Cow position: | chr21:42853381-42853725 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 31-363 |
| Cow position: | chr21:28391966-28391642 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 33-371 |
| Cow position: | chr21:7402448-7402780 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 35-374 |
| Cow position: | chr21:35323068-35322710 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 37-378 |
| Cow position: | chr21:14787141-14787471 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 119 |
| Conread position: | 42-298 |
| Cow position: | chr21:14016308-14016060 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 174, 104 |
| Conread position: | 42-299 |
| Cow position: | chr21:14024589-14024341 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 104 |
| Conread position: | 56-305 |
| Cow position: | chr21:3962172-3961911 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 67-386 |
| Cow position: | chr21:36666891-36667208 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 83-348 |
| Cow position: | chr21:17787947-17788212 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 132-371 |
| Cow position: | chr21:18171658-18171889 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 44 |
| Conread position: | 136-391 |
| Cow position: | chr21:40644614-40644861 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 158-297 |
| Cow position: | chr21:19521207-19521338 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 201-371 |
| Cow position: | chr21:42179878-42179706 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 156 |
| Conread position: | 210-371 |
| Cow position: | chr21:20015978-20016141 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 142 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 212-363 |
| Cow position: | chr21:15048154-15047998 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 215-371 |
| Cow position: | chr21:36212066-36212220 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 86, 108 |
| Conread position: | 215-372 |
| Cow position: | chr21:10556308-10556467 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 88, 142 |
| Conread position: | 221-371 |
| Cow position: | chr21:8375536-8375686 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 233-356 |
| Cow position: | chr21:3475462-3475337 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 233-356 |
| Cow position: | chr21:47962720-47962592 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.