Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 3-371 |
| Cow position: | chr22:39458810-39459167 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 141 |
| Conread position: | 4-363 |
| Cow position: | chr22:17926233-17926614 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 4-372 |
| Cow position: | chr22:19970889-19971243 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 22 |
| Conread position: | 4-391 |
| Cow position: | chr22:27077154-27076781 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 7-192 |
| Cow position: | chr22:42035326-42035508 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 7-371 |
| Cow position: | chr22:8121094-8121460 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 7-372 |
| Cow position: | chr22:27748383-27747994 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 8-164 |
| Cow position: | chr22:16547373-16547222 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-206 |
| Cow position: | chr22:17874619-17874419 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 20, 164 |
| Conread position: | 8-291 |
| Cow position: | chr22:18695689-18695419 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 8-371 |
| Cow position: | chr22:674895-674520 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 8-371 |
| Cow position: | chr22:2527006-2527358 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 8-391 |
| Cow position: | chr22:735350-734977 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-391 |
| Cow position: | chr22:8033255-8033631 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-391 |
| Cow position: | chr22:8040499-8040873 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 8-391 |
| Cow position: | chr22:31381065-31381439 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 18 |
| Conread position: | 11-193 |
| Cow position: | chr22:2002589-2002411 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 12-371 |
| Cow position: | chr22:4997616-4997963 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 13-371 |
| Cow position: | chr22:302623-302969 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 156 |
| Conread position: | 13-371 |
| Cow position: | chr22:17310306-17310652 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 15 |
| Conread position: | 13-371 |
| Cow position: | chr22:35530684-35531033 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 10 |
| Conread position: | 13-375 |
| Cow position: | chr22:10627834-10627475 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 14-371 |
| Cow position: | chr22:19093539-19093179 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 16-124 |
| Cow position: | chr22:744237-744129 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-391 |
| Cow position: | chr22:2941564-2941931 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 139 |
| Conread position: | 17-170 |
| Cow position: | chr22:23846537-23846388 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 17-235 |
| Cow position: | chr22:28401731-28401516 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 17-371 |
| Cow position: | chr22:13929152-13928804 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 18-206 |
| Cow position: | chr22:36877705-36877885 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 113, 77 |
| Conread position: | 18-303 |
| Cow position: | chr22:24921908-24921625 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 18-369 |
| Cow position: | chr22:2855045-2855378 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 18-378 |
| Cow position: | chr22:13956127-13956477 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 18-391 |
| Cow position: | chr22:41684990-41685357 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 19-364 |
| Cow position: | chr22:41500961-41501301 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 135 |
| Conread position: | 20-375 |
| Cow position: | chr22:30912345-30911994 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 23-371 |
| Cow position: | chr22:8133337-8133686 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 145 |
| Conread position: | 30-391 |
| Cow position: | chr22:17363021-17363386 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 134 |
| Conread position: | 31-349 |
| Cow position: | chr22:1611149-1610850 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 45-371 |
| Cow position: | chr22:6438247-6437932 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 45-371 |
| Cow position: | chr22:6703008-6702683 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 125 |
| Conread position: | 50-391 |
| Cow position: | chr22:12677814-12677479 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 67-306 |
| Cow position: | chr22:27389663-27389414 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 131-371 |
| Cow position: | chr22:23842398-23842156 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 196 |
| Conread position: | 193-371 |
| Cow position: | chr22:2002379-2002197 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 44, 178 |
| Conread position: | 210-356 |
| Cow position: | chr22:28401520-28401376 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 210-371 |
| Cow position: | chr22:18698450-18698613 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 79, 147 |
| Conread position: | 210-371 |
| Cow position: | chr22:18993971-18993811 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 230-391 |
| Cow position: | chr22:744079-743915 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 130 |
| Conread position: | 258-391 |
| Cow position: | chr22:44457490-44457355 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 102 |
Show alignments to all cow chromosomes.