Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-378 |
| Cow position: | chr27:22803398-22803756 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 1-391 |
| Cow position: | chr27:18467746-18467362 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 6-169 |
| Cow position: | chr27:7599452-7599291 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 7-274 |
| Cow position: | chr27:30246465-30246727 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 65, 141 |
| Conread position: | 7-287 |
| Cow position: | chr27:21526255-21525992 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 7-371 |
| Cow position: | chr27:3911818-3912193 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 8-206 |
| Cow position: | chr27:7596757-7596564 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 8-247 |
| Cow position: | chr27:7150230-7150003 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 8-321 |
| Cow position: | chr27:29451720-29452027 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 18 |
| Conread position: | 8-323 |
| Cow position: | chr27:10584802-10584497 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 8-371 |
| Cow position: | chr27:14681363-14681004 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 162 |
| Conread position: | 8-371 |
| Cow position: | chr27:26502260-26501897 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 15 |
| Conread position: | 8-378 |
| Cow position: | chr27:30988500-30988140 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 9 |
| Conread position: | 13-371 |
| Cow position: | chr27:22125112-22125457 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 13-374 |
| Cow position: | chr27:23190238-23190591 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 14 |
| Conread position: | 13-391 |
| Cow position: | chr27:57869-58242 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 13 |
| Conread position: | 13-391 |
| Cow position: | chr27:2392237-2392609 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 14-291 |
| Cow position: | chr27:7155143-7154889 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 16-294 |
| Cow position: | chr27:7142090-7141822 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 17-225 |
| Cow position: | chr27:22568237-22568036 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 17-277 |
| Cow position: | chr27:7633198-7633473 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 17-355 |
| Cow position: | chr27:26813389-26813044 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 17-371 |
| Cow position: | chr27:14139462-14139095 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 156 |
| Conread position: | 17-375 |
| Cow position: | chr27:29498500-29498868 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 80, 104 |
| Conread position: | 17-386 |
| Cow position: | chr27:21528147-21527780 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 18-199 |
| Cow position: | chr27:7158383-7158205 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 74 |
| Conread position: | 18-291 |
| Cow position: | chr27:7133286-7133020 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 18-381 |
| Cow position: | chr27:29522769-29523124 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 135 |
| Conread position: | 18-387 |
| Cow position: | chr27:7175206-7174833 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 198, 128 |
| Conread position: | 19-363 |
| Cow position: | chr27:18109967-18109606 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 82 |
| Conread position: | 19-372 |
| Cow position: | chr27:23052377-23052742 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 67 |
| Conread position: | 20-367 |
| Cow position: | chr27:14333945-14333607 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 20-371 |
| Cow position: | chr27:23877343-23877678 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 34 |
| Conread position: | 36-281 |
| Cow position: | chr27:22990292-22990056 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 70 |
| Conread position: | 45-391 |
| Cow position: | chr27:30246968-30247306 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 110 |
| Conread position: | 49-371 |
| Cow position: | chr27:29995862-29996174 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 60-386 |
| Cow position: | chr27:21601000-21601320 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 101-356 |
| Cow position: | chr27:7086137-7086385 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 104-370 |
| Cow position: | chr27:14151827-14152111 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 120-378 |
| Cow position: | chr27:1670031-1669783 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 135-370 |
| Cow position: | chr27:20754518-20754287 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 144-371 |
| Cow position: | chr27:14181810-14181599 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 160, 29 |
| Conread position: | 149-386 |
| Cow position: | chr27:29489585-29489353 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 202-371 |
| Cow position: | chr27:530635-530802 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 102, 122 |
| Conread position: | 204-343 |
| Cow position: | chr27:21207786-21207643 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 209-363 |
| Cow position: | chr27:22123967-22123808 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 215-389 |
| Cow position: | chr27:22567834-22567655 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 108 |
| Conread position: | 233-371 |
| Cow position: | chr27:3082984-3082843 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 237-359 |
| Cow position: | chr27:7148646-7148521 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.