Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 2-371 |
| Cow position: | chr29:36638486-36638845 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 4-278 |
| Cow position: | chr29:16478670-16478384 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 4-371 |
| Cow position: | chr29:28847480-28847097 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 5-385 |
| Cow position: | chr29:17212030-17212380 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 5-391 |
| Cow position: | chr29:3366177-3365814 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 7-391 |
| Cow position: | chr29:44693032-44693407 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 8-155 |
| Cow position: | chr29:36571447-36571300 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-192 |
| Cow position: | chr29:32294534-32294353 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 8-203 |
| Cow position: | chr29:31235922-31236115 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 8-364 |
| Cow position: | chr29:5523020-5523373 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 8-371 |
| Cow position: | chr29:11450162-11449800 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 80 |
| Conread position: | 8-378 |
| Cow position: | chr29:32104032-32104394 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 139 |
| Conread position: | 8-391 |
| Cow position: | chr29:40587685-40588055 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 18 |
| Conread position: | 13-171 |
| Cow position: | chr29:32150241-32150400 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 13-348 |
| Cow position: | chr29:26898159-26897842 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 13-371 |
| Cow position: | chr29:15852205-15852580 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 115, 22 |
| Conread position: | 16-238 |
| Cow position: | chr29:14499523-14499310 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 200, 139 |
| Conread position: | 17-371 |
| Cow position: | chr29:18183328-18182972 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 17-371 |
| Cow position: | chr29:28794457-28794826 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 17-371 |
| Cow position: | chr29:30723212-30723575 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 158 |
| Conread position: | 17-371 |
| Cow position: | chr29:33434845-33435218 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 81 |
| Conread position: | 19-265 |
| Cow position: | chr29:16898210-16897971 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 155 |
| Conread position: | 19-368 |
| Cow position: | chr29:31218357-31218679 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 19-371 |
| Cow position: | chr29:30715203-30714863 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 20-300 |
| Cow position: | chr29:20705985-20706251 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 249, 52 |
| Conread position: | 20-371 |
| Cow position: | chr29:5624302-5624667 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 128 |
| Conread position: | 20-371 |
| Cow position: | chr29:26596619-26596967 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 133 |
| Conread position: | 23-369 |
| Cow position: | chr29:43994002-43994344 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 115 |
| Conread position: | 30-351 |
| Cow position: | chr29:8941047-8940730 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 140 |
| Conread position: | 30-386 |
| Cow position: | chr29:30651799-30651447 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 33-320 |
| Cow position: | chr29:17102244-17102544 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 46-371 |
| Cow position: | chr29:12897454-12897132 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 87 |
| Conread position: | 46-382 |
| Cow position: | chr29:420531-420859 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 59 |
| Conread position: | 48-386 |
| Cow position: | chr29:36570853-36571174 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 86, 99 |
| Conread position: | 92-336 |
| Cow position: | chr29:38051387-38051156 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 214, 64 |
| Conread position: | 123-371 |
| Cow position: | chr29:42198896-42198655 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 134-371 |
| Cow position: | chr29:6389665-6389920 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 203-386 |
| Cow position: | chr29:32882311-32882125 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 209-375 |
| Cow position: | chr29:44130738-44130905 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 148 |
| Conread position: | 210-371 |
| Cow position: | chr29:31236326-31236491 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 94, 151 |
| Conread position: | 211-375 |
| Cow position: | chr29:28012701-28012537 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 63 |
Show alignments to all cow chromosomes.