Cow genome map
Conread name: | rpgl08_f5.y1 |
Conread position: | 1-378 |
Cow position: | chr3:28207968-28207611 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 22 |
Conread position: | 5-167 |
Cow position: | chr3:22699320-22699158 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 127 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 16, 146 |
Conread position: | 5-205 |
Cow position: | chr3:82508110-82508309 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 144 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 165, 106 |
Conread position: | 5-352 |
Cow position: | chr3:7830233-7830597 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 18 |
Conread position: | 7-352 |
Cow position: | chr3:24773421-24773082 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 298, 16 |
Conread position: | 8-158 |
Cow position: | chr3:65525743-65525891 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 112 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 8-192 |
Cow position: | chr3:42935830-42936011 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 142 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 126, 19 |
Conread position: | 8-275 |
Cow position: | chr3:60520662-60520917 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 190 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 126, 18 |
Conread position: | 8-276 |
Cow position: | chr3:28462287-28462544 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 199 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 123, 9 |
Conread position: | 8-278 |
Cow position: | chr3:75097486-75097750 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 202 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 23, 146 |
Conread position: | 8-352 |
Cow position: | chr3:60068027-60067696 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 15 |
Conread position: | 8-371 |
Cow position: | chr3:7812905-7812557 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 15 |
Conread position: | 8-371 |
Cow position: | chr3:10687737-10688116 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 167 |
Conread position: | 8-391 |
Cow position: | chr3:6190478-6190095 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 15 |
Conread position: | 8-391 |
Cow position: | chr3:14296494-14296120 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 18 |
Conread position: | 8-391 |
Cow position: | chr3:35352370-35352739 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 18 |
Conread position: | 11-118 |
Cow position: | chr3:28463924-28464029 (view UCSC Genome Browser custom track) |
Alignm length: | 108 |
Alignm identity: | 87 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 11-354 |
Cow position: | chr3:81391015-81391336 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 15 |
Conread position: | 11-371 |
Cow position: | chr3:5619530-5619188 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 255 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 39, 87 |
Conread position: | 12-363 |
Cow position: | chr3:77332712-77333051 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 14 |
Conread position: | 13-191 |
Cow position: | chr3:22702447-22702621 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 138 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 53, 17 |
Conread position: | 13-201 |
Cow position: | chr3:56307820-56308006 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 135 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 28, 10 |
Conread position: | 13-250 |
Cow position: | chr3:3804045-3803816 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 172 |
Alignm E-value: | 9e-32 |
Alignm gaps (pig, cow): | 121, 143 |
Conread position: | 13-316 |
Cow position: | chr3:36843982-36844273 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 218 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 44, 14 |
Conread position: | 13-319 |
Cow position: | chr3:74711461-74711151 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 10 |
Conread position: | 13-347 |
Cow position: | chr3:2306127-2306474 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 217 |
Conread position: | 13-370 |
Cow position: | chr3:1839926-1839555 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 159 |
Conread position: | 13-371 |
Cow position: | chr3:19696736-19696385 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 10 |
Conread position: | 13-372 |
Cow position: | chr3:85150233-85149881 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 53 |
Conread position: | 13-385 |
Cow position: | chr3:28485691-28485328 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 134 |
Conread position: | 13-391 |
Cow position: | chr3:77944097-77943733 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 271 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 89, 10 |
Conread position: | 16-372 |
Cow position: | chr3:11952449-11952787 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 11 |
Conread position: | 17-333 |
Cow position: | chr3:36780514-36780824 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 121 |
Conread position: | 17-345 |
Cow position: | chr3:9194764-9195098 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 252 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 117, 67 |
Conread position: | 17-369 |
Cow position: | chr3:22696563-22696906 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 116 |
Conread position: | 17-370 |
Cow position: | chr3:17641615-17641990 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 268 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 186, 102 |
Conread position: | 17-371 |
Cow position: | chr3:33020355-33020700 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 151 |
Conread position: | 17-371 |
Cow position: | chr3:49006442-49006097 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 35 |
Conread position: | 17-371 |
Cow position: | chr3:58307126-58306783 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 163 |
Conread position: | 17-371 |
Cow position: | chr3:84919471-84919130 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 133 |
Conread position: | 18-277 |
Cow position: | chr3:24797630-24797364 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 200 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 125, 34 |
Conread position: | 18-291 |
Cow position: | chr3:38124646-38124911 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 203 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 116, 129 |
Conread position: | 18-371 |
Cow position: | chr3:59205744-59205392 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 155 |
Conread position: | 18-391 |
Cow position: | chr3:3253555-3253923 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 130 |
Conread position: | 19-287 |
Cow position: | chr3:60507873-60508133 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 128 |
Conread position: | 19-370 |
Cow position: | chr3:28724949-28724607 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 240, 77 |
Conread position: | 19-378 |
Cow position: | chr3:78548646-78548994 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 32 |
Conread position: | 19-391 |
Cow position: | chr3:84954631-84954997 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 138 |
Conread position: | 20-200 |
Cow position: | chr3:53578241-53578421 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 144 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 133, 150 |
Conread position: | 20-224 |
Cow position: | chr3:56305301-56305104 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 153 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 148, 0 |
Conread position: | 22-375 |
Cow position: | chr3:6645713-6645370 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 132 |
Conread position: | 23-166 |
Cow position: | chr3:6050022-6049879 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 109 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 23-356 |
Cow position: | chr3:23846941-23846614 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 134 |
Conread position: | 23-357 |
Cow position: | chr3:36783244-36783573 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 153 |
Conread position: | 23-375 |
Cow position: | chr3:83785445-83785781 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 247 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 270, 97 |
Conread position: | 25-344 |
Cow position: | chr3:6762114-6762450 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 173, 99 |
Conread position: | 34-204 |
Cow position: | chr3:5534705-5534538 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 129 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 112, 0 |
Conread position: | 35-363 |
Cow position: | chr3:49849815-49850153 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 11 |
Conread position: | 37-391 |
Cow position: | chr3:28443949-28443607 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 64 |
Conread position: | 38-325 |
Cow position: | chr3:48037247-48037530 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 110 |
Conread position: | 39-299 |
Cow position: | chr3:30988272-30988015 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 189 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 229, 129 |
Conread position: | 42-391 |
Cow position: | chr3:7810087-7810443 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 245 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 98, 182 |
Conread position: | 44-391 |
Cow position: | chr3:32168554-32168215 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 107 |
Conread position: | 45-378 |
Cow position: | chr3:48090947-48091269 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 108 |
Conread position: | 46-359 |
Cow position: | chr3:11030187-11030518 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 132 |
Conread position: | 50-372 |
Cow position: | chr3:2060091-2059787 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 236 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 248, 88 |
Conread position: | 50-382 |
Cow position: | chr3:29705699-29705378 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 240 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 235, 83 |
Conread position: | 54-361 |
Cow position: | chr3:34868488-34868181 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 118 |
Conread position: | 69-378 |
Cow position: | chr3:5737150-5736866 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 218 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 65, 50 |
Conread position: | 70-371 |
Cow position: | chr3:48573461-48573169 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 217 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 221, 26 |
Conread position: | 80-386 |
Cow position: | chr3:7810024-7809728 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 221 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 54, 76 |
Conread position: | 112-391 |
Cow position: | chr3:28464553-28464836 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 29 |
Conread position: | 116-371 |
Cow position: | chr3:65525898-65526163 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 192 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 87, 58 |
Conread position: | 141-371 |
Cow position: | chr3:28692074-28692304 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 185 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 9, 33 |
Conread position: | 145-363 |
Cow position: | chr3:31360122-31360332 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 163 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 74, 28 |
Conread position: | 193-369 |
Cow position: | chr3:6049605-6049430 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 140 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 114, 18 |
Conread position: | 193-371 |
Cow position: | chr3:25899142-25899323 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 136 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 19, 41 |
Conread position: | 204-378 |
Cow position: | chr3:22699140-22698968 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 137 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 15, 120 |
Conread position: | 204-391 |
Cow position: | chr3:34399216-34399032 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 138 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 100, 61 |
Conread position: | 210-371 |
Cow position: | chr3:10215696-10215545 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 126 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 97, 32 |
Conread position: | 211-371 |
Cow position: | chr3:28500950-28500793 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 125 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 23, 28 |
Conread position: | 215-363 |
Cow position: | chr3:3251543-3251400 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 122 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 76, 92 |
Conread position: | 215-374 |
Cow position: | chr3:48095266-48095426 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 128 |
Alignm E-value: | 9e-32 |
Alignm gaps (pig, cow): | 92, 145 |
Conread position: | 215-375 |
Cow position: | chr3:81387245-81387083 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 127 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 92, 146 |
Conread position: | 218-378 |
Cow position: | chr3:56308283-56308442 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 129 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 88, 105 |
Conread position: | 233-371 |
Cow position: | chr3:45838909-45838766 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 113 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 248-371 |
Cow position: | chr3:82515718-82515841 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 102 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 60, 21 |
Show alignments to all cow chromosomes.