Cow genome map

Conread name: rpgl08_f5.y1

Conread position: 1-378
Cow position: chr3:28207968-28207611 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 22

Conread position: 5-167
Cow position: chr3:22699320-22699158 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 146

Conread position: 5-205
Cow position: chr3:82508110-82508309 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 165, 106

Conread position: 5-352
Cow position: chr3:7830233-7830597 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 18

Conread position: 7-352
Cow position: chr3:24773421-24773082 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 16

Conread position: 8-158
Cow position: chr3:65525743-65525891 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 8-192
Cow position: chr3:42935830-42936011 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 126, 19

Conread position: 8-275
Cow position: chr3:60520662-60520917 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 126, 18

Conread position: 8-276
Cow position: chr3:28462287-28462544 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 123, 9

Conread position: 8-278
Cow position: chr3:75097486-75097750 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 23, 146

Conread position: 8-352
Cow position: chr3:60068027-60067696 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 15

Conread position: 8-371
Cow position: chr3:7812905-7812557 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 15

Conread position: 8-371
Cow position: chr3:10687737-10688116 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 167

Conread position: 8-391
Cow position: chr3:6190478-6190095 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 15

Conread position: 8-391
Cow position: chr3:14296494-14296120 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 18

Conread position: 8-391
Cow position: chr3:35352370-35352739 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 18

Conread position: 11-118
Cow position: chr3:28463924-28464029 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 11-354
Cow position: chr3:81391015-81391336 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 15

Conread position: 11-371
Cow position: chr3:5619530-5619188 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 87

Conread position: 12-363
Cow position: chr3:77332712-77333051 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 14

Conread position: 13-191
Cow position: chr3:22702447-22702621 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 17

Conread position: 13-201
Cow position: chr3:56307820-56308006 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 10

Conread position: 13-250
Cow position: chr3:3804045-3803816 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 121, 143

Conread position: 13-316
Cow position: chr3:36843982-36844273 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 44, 14

Conread position: 13-319
Cow position: chr3:74711461-74711151 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 10

Conread position: 13-347
Cow position: chr3:2306127-2306474 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 217

Conread position: 13-370
Cow position: chr3:1839926-1839555 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 159

Conread position: 13-371
Cow position: chr3:19696736-19696385 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 10

Conread position: 13-372
Cow position: chr3:85150233-85149881 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 13-385
Cow position: chr3:28485691-28485328 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 134

Conread position: 13-391
Cow position: chr3:77944097-77943733 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 89, 10

Conread position: 16-372
Cow position: chr3:11952449-11952787 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 11

Conread position: 17-333
Cow position: chr3:36780514-36780824 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 121

Conread position: 17-345
Cow position: chr3:9194764-9195098 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 117, 67

Conread position: 17-369
Cow position: chr3:22696563-22696906 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 116

Conread position: 17-370
Cow position: chr3:17641615-17641990 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 186, 102

Conread position: 17-371
Cow position: chr3:33020355-33020700 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 151

Conread position: 17-371
Cow position: chr3:49006442-49006097 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 35

Conread position: 17-371
Cow position: chr3:58307126-58306783 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 163

Conread position: 17-371
Cow position: chr3:84919471-84919130 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 133

Conread position: 18-277
Cow position: chr3:24797630-24797364 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 125, 34

Conread position: 18-291
Cow position: chr3:38124646-38124911 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 116, 129

Conread position: 18-371
Cow position: chr3:59205744-59205392 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 155

Conread position: 18-391
Cow position: chr3:3253555-3253923 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 19-287
Cow position: chr3:60507873-60508133 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 128

Conread position: 19-370
Cow position: chr3:28724949-28724607 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 77

Conread position: 19-378
Cow position: chr3:78548646-78548994 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 32

Conread position: 19-391
Cow position: chr3:84954631-84954997 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 138

Conread position: 20-200
Cow position: chr3:53578241-53578421 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 133, 150

Conread position: 20-224
Cow position: chr3:56305301-56305104 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 148, 0

Conread position: 22-375
Cow position: chr3:6645713-6645370 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 132

Conread position: 23-166
Cow position: chr3:6050022-6049879 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 23-356
Cow position: chr3:23846941-23846614 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 134

Conread position: 23-357
Cow position: chr3:36783244-36783573 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 153

Conread position: 23-375
Cow position: chr3:83785445-83785781 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 270, 97

Conread position: 25-344
Cow position: chr3:6762114-6762450 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 99

Conread position: 34-204
Cow position: chr3:5534705-5534538 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 112, 0

Conread position: 35-363
Cow position: chr3:49849815-49850153 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 11

Conread position: 37-391
Cow position: chr3:28443949-28443607 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 64

Conread position: 38-325
Cow position: chr3:48037247-48037530 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 110

Conread position: 39-299
Cow position: chr3:30988272-30988015 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 229, 129

Conread position: 42-391
Cow position: chr3:7810087-7810443 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 98, 182

Conread position: 44-391
Cow position: chr3:32168554-32168215 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 107

Conread position: 45-378
Cow position: chr3:48090947-48091269 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 108

Conread position: 46-359
Cow position: chr3:11030187-11030518 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 132

Conread position: 50-372
Cow position: chr3:2060091-2059787 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 248, 88

Conread position: 50-382
Cow position: chr3:29705699-29705378 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 235, 83

Conread position: 54-361
Cow position: chr3:34868488-34868181 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 118

Conread position: 69-378
Cow position: chr3:5737150-5736866 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 65, 50

Conread position: 70-371
Cow position: chr3:48573461-48573169 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 221, 26

Conread position: 80-386
Cow position: chr3:7810024-7809728 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 76

Conread position: 112-391
Cow position: chr3:28464553-28464836 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 29

Conread position: 116-371
Cow position: chr3:65525898-65526163 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 58

Conread position: 141-371
Cow position: chr3:28692074-28692304 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 33

Conread position: 145-363
Cow position: chr3:31360122-31360332 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 74, 28

Conread position: 193-369
Cow position: chr3:6049605-6049430 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 114, 18

Conread position: 193-371
Cow position: chr3:25899142-25899323 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 41

Conread position: 204-378
Cow position: chr3:22699140-22698968 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 15, 120

Conread position: 204-391
Cow position: chr3:34399216-34399032 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 61

Conread position: 210-371
Cow position: chr3:10215696-10215545 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 97, 32

Conread position: 211-371
Cow position: chr3:28500950-28500793 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 28

Conread position: 215-363
Cow position: chr3:3251543-3251400 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 76, 92

Conread position: 215-374
Cow position: chr3:48095266-48095426 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 92, 145

Conread position: 215-375
Cow position: chr3:81387245-81387083 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 92, 146

Conread position: 218-378
Cow position: chr3:56308283-56308442 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 88, 105

Conread position: 233-371
Cow position: chr3:45838909-45838766 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 248-371
Cow position: chr3:82515718-82515841 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 21

Show alignments to all cow chromosomes.