Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-391 |
| Cow position: | chr4:7160262-7160645 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 25 |
| Conread position: | 2-378 |
| Cow position: | chr4:14575935-14576298 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 5-356 |
| Cow position: | chr4:54141705-54142066 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 7-378 |
| Cow position: | chr4:64673273-64673639 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 7-391 |
| Cow position: | chr4:31596410-31596796 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 8-235 |
| Cow position: | chr4:18005864-18006084 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 8-259 |
| Cow position: | chr4:63585962-63586204 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 8-371 |
| Cow position: | chr4:13150752-13150400 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 78 |
| Conread position: | 8-371 |
| Cow position: | chr4:43420388-43420742 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 35 |
| Conread position: | 8-391 |
| Cow position: | chr4:14423899-14424278 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-391 |
| Cow position: | chr4:47132845-47132469 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 11-169 |
| Cow position: | chr4:42485829-42485673 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 13-119 |
| Cow position: | chr4:67562369-67562474 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 13-190 |
| Cow position: | chr4:48236392-48236220 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 13-274 |
| Cow position: | chr4:10418987-10419255 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 13-278 |
| Cow position: | chr4:6654725-6654983 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 120, 144 |
| Conread position: | 13-363 |
| Cow position: | chr4:29905348-29905687 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 125 |
| Conread position: | 13-371 |
| Cow position: | chr4:3464183-3463840 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 13-371 |
| Cow position: | chr4:14479954-14480314 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 16-310 |
| Cow position: | chr4:36494013-36494302 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 16-370 |
| Cow position: | chr4:58431400-58431772 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 220 |
| Conread position: | 16-375 |
| Cow position: | chr4:67568354-67568010 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 16-391 |
| Cow position: | chr4:23122244-23122613 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 140 |
| Conread position: | 16-391 |
| Cow position: | chr4:45451736-45451374 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 18 |
| Conread position: | 17-274 |
| Cow position: | chr4:34324053-34324313 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 170 |
| Conread position: | 17-371 |
| Cow position: | chr4:44622062-44621723 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 121 |
| Conread position: | 17-371 |
| Cow position: | chr4:65944270-65944615 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 17-372 |
| Cow position: | chr4:38925928-38925556 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 151 |
| Conread position: | 17-374 |
| Cow position: | chr4:43465369-43465734 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 17-378 |
| Cow position: | chr4:57725399-57725751 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 18-333 |
| Cow position: | chr4:32310422-32310101 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 138 |
| Conread position: | 18-371 |
| Cow position: | chr4:61152486-61152118 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 322 |
| Conread position: | 19-171 |
| Cow position: | chr4:62447919-62448069 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 19-279 |
| Cow position: | chr4:64152913-64152663 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 19-371 |
| Cow position: | chr4:59531997-59531648 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 187 |
| Conread position: | 19-391 |
| Cow position: | chr4:7983726-7983372 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 135 |
| Conread position: | 23-363 |
| Cow position: | chr4:44086356-44086026 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 23-371 |
| Cow position: | chr4:66836143-66835781 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 151 |
| Conread position: | 24-370 |
| Cow position: | chr4:42981349-42980988 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 117 |
| Conread position: | 33-235 |
| Cow position: | chr4:52325612-52325809 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 36-371 |
| Cow position: | chr4:12702260-12701936 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 138 |
| Conread position: | 45-371 |
| Cow position: | chr4:10979935-10980254 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 45-371 |
| Cow position: | chr4:41123014-41123333 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 111 |
| Conread position: | 45-386 |
| Cow position: | chr4:60093716-60094048 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 102 |
| Conread position: | 72-355 |
| Cow position: | chr4:28286188-28285914 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 104-391 |
| Cow position: | chr4:32796696-32796414 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 119-351 |
| Cow position: | chr4:27699221-27699444 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 180, 11 |
| Conread position: | 194-356 |
| Cow position: | chr4:42485567-42485407 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 203-374 |
| Cow position: | chr4:48236170-48236000 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 203-374 |
| Cow position: | chr4:67562525-67562698 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 205-378 |
| Cow position: | chr4:57717044-57717218 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 155 |
| Conread position: | 209-370 |
| Cow position: | chr4:11169295-11169132 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 210-371 |
| Cow position: | chr4:63393967-63394121 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 210-371 |
| Cow position: | chr4:63398564-63398718 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 218-370 |
| Cow position: | chr4:3868798-3868645 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 219-352 |
| Cow position: | chr4:32024596-32024728 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 233-371 |
| Cow position: | chr4:5228714-5228854 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 233-371 |
| Cow position: | chr4:14528289-14528430 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 235-370 |
| Cow position: | chr4:44753874-44754012 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 249-375 |
| Cow position: | chr4:12652079-12652208 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 109 |
Show alignments to all cow chromosomes.