Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 4-371 |
| Cow position: | chr5:25896606-25896234 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 24 |
| Conread position: | 5-391 |
| Cow position: | chr5:46273552-46273173 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 5-391 |
| Cow position: | chr5:56260265-56260635 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 6-375 |
| Cow position: | chr5:23742206-23742555 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 6-386 |
| Cow position: | chr5:64038726-64039086 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 11 |
| Conread position: | 7-201 |
| Cow position: | chr5:27995735-27995929 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 7-277 |
| Cow position: | chr5:35335487-35335231 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 127, 16 |
| Conread position: | 7-309 |
| Cow position: | chr5:58439115-58439409 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 7-352 |
| Cow position: | chr5:73520339-73520007 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 7-371 |
| Cow position: | chr5:37371881-37372251 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 7-374 |
| Cow position: | chr5:67962231-67962575 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 10 |
| Conread position: | 8-171 |
| Cow position: | chr5:42183890-42183727 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-349 |
| Cow position: | chr5:47840179-47839824 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 15 |
| Conread position: | 8-371 |
| Cow position: | chr5:18584785-18585172 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-371 |
| Cow position: | chr5:21042734-21043083 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 22 |
| Conread position: | 8-371 |
| Cow position: | chr5:23628259-23628631 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 15 |
| Conread position: | 8-371 |
| Cow position: | chr5:29075776-29076143 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 8-371 |
| Cow position: | chr5:30204349-30204727 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 8-371 |
| Cow position: | chr5:39800992-39800609 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 15 |
| Conread position: | 8-372 |
| Cow position: | chr5:63516081-63515709 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 8-387 |
| Cow position: | chr5:13420774-13421148 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 8-391 |
| Cow position: | chr5:24456591-24456217 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 12-129 |
| Cow position: | chr5:21515262-21515147 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 12-276 |
| Cow position: | chr5:67107093-67107347 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 12-378 |
| Cow position: | chr5:60969064-60969423 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 13-366 |
| Cow position: | chr5:42785798-42785439 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 13-372 |
| Cow position: | chr5:17736906-17737244 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 13-385 |
| Cow position: | chr5:9368470-9368837 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 13-385 |
| Cow position: | chr5:34150971-34150610 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 13-391 |
| Cow position: | chr5:48275456-48275063 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 14-365 |
| Cow position: | chr5:47772083-47771717 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 16-170 |
| Cow position: | chr5:13726440-13726592 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 16-330 |
| Cow position: | chr5:67098334-67098643 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 16-375 |
| Cow position: | chr5:1498754-1499084 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 16-391 |
| Cow position: | chr5:73888132-73887764 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 17-227 |
| Cow position: | chr5:45198976-45198774 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 17-352 |
| Cow position: | chr5:70720918-70720596 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 17-364 |
| Cow position: | chr5:75573569-75573209 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 17-370 |
| Cow position: | chr5:19914339-19914703 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 18-339 |
| Cow position: | chr5:16038132-16037821 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 18-378 |
| Cow position: | chr5:47357641-47357987 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 19-372 |
| Cow position: | chr5:64104182-64103817 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 313 |
| Conread position: | 23-328 |
| Cow position: | chr5:18709711-18710033 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 116, 159 |
| Conread position: | 30-334 |
| Cow position: | chr5:70704845-70705152 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 45-200 |
| Cow position: | chr5:69133068-69133222 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 45-371 |
| Cow position: | chr5:42100192-42099875 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 45-372 |
| Cow position: | chr5:72939815-72939476 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 84 |
| Conread position: | 49-352 |
| Cow position: | chr5:29537243-29536925 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 127 |
| Conread position: | 54-370 |
| Cow position: | chr5:53637941-53638251 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 54-371 |
| Cow position: | chr5:66106492-66106821 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 87 |
| Conread position: | 55-362 |
| Cow position: | chr5:9969360-9969661 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 70-371 |
| Cow position: | chr5:47619719-47619406 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 125, 103 |
| Conread position: | 72-352 |
| Cow position: | chr5:69115882-69115608 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 104-375 |
| Cow position: | chr5:73480412-73480155 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 205, 33 |
| Conread position: | 116-371 |
| Cow position: | chr5:64796078-64796349 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 133-371 |
| Cow position: | chr5:21514925-21514685 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 150 |
| Conread position: | 135-379 |
| Cow position: | chr5:74780143-74780377 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 20 |
| Conread position: | 136-371 |
| Cow position: | chr5:2441343-2441098 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 6 |
| Conread position: | 204-371 |
| Cow position: | chr5:49920322-49920490 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 130 |
| Conread position: | 210-371 |
| Cow position: | chr5:42183386-42183224 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 221-371 |
| Cow position: | chr5:42820233-42820384 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 139 |
| Conread position: | 233-371 |
| Cow position: | chr5:8764338-8764479 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 233-371 |
| Cow position: | chr5:47996450-47996308 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 126 |
| Conread position: | 233-375 |
| Cow position: | chr5:48135707-48135844 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 235-371 |
| Cow position: | chr5:24888638-24888775 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 240-356 |
| Cow position: | chr5:12219216-12219333 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.