Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-200 |
| Cow position: | chr7:13839783-13839980 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 1-227 |
| Cow position: | chr7:44616606-44616822 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 2-371 |
| Cow position: | chr7:30545005-30544648 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 21 |
| Conread position: | 3-295 |
| Cow position: | chr7:36905504-36905786 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 3-320 |
| Cow position: | chr7:49920513-49920219 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 3-391 |
| Cow position: | chr7:49058959-49058578 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 20 |
| Conread position: | 6-344 |
| Cow position: | chr7:41282288-41281953 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 7-371 |
| Cow position: | chr7:38469657-38470034 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 8-266 |
| Cow position: | chr7:33509674-33509422 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 141, 163 |
| Conread position: | 8-278 |
| Cow position: | chr7:65741695-65741955 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 8-347 |
| Cow position: | chr7:25804515-25804854 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 8-371 |
| Cow position: | chr7:2752847-2753199 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 8-371 |
| Cow position: | chr7:25828506-25828861 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 8-371 |
| Cow position: | chr7:38470162-38470528 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 11-125 |
| Cow position: | chr7:47887626-47887513 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 11-370 |
| Cow position: | chr7:33597289-33596915 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 17 |
| Conread position: | 12-363 |
| Cow position: | chr7:31108511-31108180 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 12-370 |
| Cow position: | chr7:38811309-38810953 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 13-203 |
| Cow position: | chr7:19922451-19922640 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 156 |
| Conread position: | 13-289 |
| Cow position: | chr7:43182622-43182329 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 13-305 |
| Cow position: | chr7:41084233-41084542 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 167 |
| Conread position: | 13-370 |
| Cow position: | chr7:57380635-57380285 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 13-371 |
| Cow position: | chr7:161819-161446 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 13-391 |
| Cow position: | chr7:5014813-5015185 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 143 |
| Conread position: | 16-367 |
| Cow position: | chr7:51756349-51756000 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 17-169 |
| Cow position: | chr7:23958871-23958720 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 17-345 |
| Cow position: | chr7:9348665-9348994 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 17-371 |
| Cow position: | chr7:40900334-40899989 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 17-371 |
| Cow position: | chr7:50754996-50754651 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 151 |
| Conread position: | 18-306 |
| Cow position: | chr7:42133368-42133091 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 18-371 |
| Cow position: | chr7:55975325-55974988 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 52 |
| Conread position: | 19-294 |
| Cow position: | chr7:45903555-45903293 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 200, 34 |
| Conread position: | 20-325 |
| Cow position: | chr7:44186361-44186663 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 27-237 |
| Cow position: | chr7:62015417-62015214 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 36-371 |
| Cow position: | chr7:50718211-50718565 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 137 |
| Conread position: | 44-197 |
| Cow position: | chr7:32738573-32738723 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 45-352 |
| Cow position: | chr7:40909964-40909645 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 77 |
| Conread position: | 54-355 |
| Cow position: | chr7:50589497-50589790 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 239, 62 |
| Conread position: | 54-369 |
| Cow position: | chr7:27466714-27467022 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 70-352 |
| Cow position: | chr7:63334439-63334739 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 81-391 |
| Cow position: | chr7:66164873-66164558 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 88-292 |
| Cow position: | chr7:48761282-48761480 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 101-391 |
| Cow position: | chr7:23350096-23349818 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 133-371 |
| Cow position: | chr7:37293493-37293275 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 150, 45 |
| Conread position: | 138-371 |
| Cow position: | chr7:11157626-11157879 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 193-371 |
| Cow position: | chr7:3662246-3662065 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 202-371 |
| Cow position: | chr7:47886676-47886501 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 204-375 |
| Cow position: | chr7:12452423-12452595 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 215-371 |
| Cow position: | chr7:19929952-19930107 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 223-371 |
| Cow position: | chr7:936854-937000 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 223-378 |
| Cow position: | chr7:62014948-62014796 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 100 |
| Conread position: | 233-375 |
| Cow position: | chr7:18107893-18107752 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 91 |
Show alignments to all cow chromosomes.