Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 1-378 |
| Cow position: | chr8:59234300-59234665 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 2-391 |
| Cow position: | chr8:21986693-21986318 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 7-278 |
| Cow position: | chr8:12515342-12515603 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 8-306 |
| Cow position: | chr8:4933260-4933544 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 8-346 |
| Cow position: | chr8:59039605-59039916 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 8-371 |
| Cow position: | chr8:23704247-23704622 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 8-371 |
| Cow position: | chr8:61169111-61168752 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 8-391 |
| Cow position: | chr8:8784036-8784402 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 7 |
| Conread position: | 8-391 |
| Cow position: | chr8:21896471-21896832 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 148 |
| Conread position: | 11-371 |
| Cow position: | chr8:45965899-45966257 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 128 |
| Conread position: | 11-391 |
| Cow position: | chr8:39940003-39940387 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 12-391 |
| Cow position: | chr8:36296014-36296388 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 18 |
| Conread position: | 13-241 |
| Cow position: | chr8:36295686-36295469 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 135, 14 |
| Conread position: | 16-378 |
| Cow position: | chr8:9701758-9701414 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 16-391 |
| Cow position: | chr8:18951359-18950998 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 16-391 |
| Cow position: | chr8:21978321-21977959 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 81 |
| Conread position: | 17-378 |
| Cow position: | chr8:5958999-5959347 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 18-338 |
| Cow position: | chr8:5649893-5650203 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 18-375 |
| Cow position: | chr8:53043863-53044211 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 129 |
| Conread position: | 19-151 |
| Cow position: | chr8:30548959-30549091 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 19-370 |
| Cow position: | chr8:9077176-9076841 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 19-378 |
| Cow position: | chr8:39881010-39880662 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 137 |
| Conread position: | 19-379 |
| Cow position: | chr8:58150171-58150525 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 19-391 |
| Cow position: | chr8:8573454-8573833 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 20-371 |
| Cow position: | chr8:3551906-3552265 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 50 |
| Conread position: | 20-371 |
| Cow position: | chr8:46750951-46751306 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 123, 33 |
| Conread position: | 25-371 |
| Cow position: | chr8:1103278-1102943 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 45 |
| Conread position: | 30-371 |
| Cow position: | chr8:7419384-7419053 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 60 |
| Conread position: | 34-361 |
| Cow position: | chr8:37094171-37094490 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 35-351 |
| Cow position: | chr8:29240358-29240680 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 37-292 |
| Cow position: | chr8:58166664-58166908 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 37-371 |
| Cow position: | chr8:12524577-12524898 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 69 |
| Conread position: | 46-352 |
| Cow position: | chr8:25585294-25585010 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 66-363 |
| Cow position: | chr8:40113990-40113696 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 101 |
| Conread position: | 70-375 |
| Cow position: | chr8:12576526-12576816 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 104-385 |
| Cow position: | chr8:48707403-48707678 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 113-371 |
| Cow position: | chr8:47801873-47802147 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 204-351 |
| Cow position: | chr8:30549385-30549532 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 204-391 |
| Cow position: | chr8:19396465-19396282 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 209-371 |
| Cow position: | chr8:33777279-33777438 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 96 |
| Conread position: | 210-371 |
| Cow position: | chr8:1365751-1365589 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 223-371 |
| Cow position: | chr8:36295280-36295126 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 138 |
Show alignments to all cow chromosomes.