Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 3-275 |
| Cow position: | chr9:41843062-41843323 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 213, 23 |
| Conread position: | 5-371 |
| Cow position: | chr9:12637905-12638272 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 133 |
| Conread position: | 7-349 |
| Cow position: | chr9:16619412-16619065 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 7-391 |
| Cow position: | chr9:1097280-1097664 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 8-128 |
| Cow position: | chr9:49338985-49339103 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 8-325 |
| Cow position: | chr9:36602824-36602513 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 15 |
| Conread position: | 8-349 |
| Cow position: | chr9:1387508-1387861 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 8-371 |
| Cow position: | chr9:15992975-15993333 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 8-371 |
| Cow position: | chr9:58569781-58569428 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 11-374 |
| Cow position: | chr9:41026653-41027012 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 12-371 |
| Cow position: | chr9:5479172-5479555 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 13-169 |
| Cow position: | chr9:61574157-61574311 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 13-171 |
| Cow position: | chr9:1632467-1632312 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-307 |
| Cow position: | chr9:17988691-17988971 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-371 |
| Cow position: | chr9:6260067-6260434 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 15 |
| Conread position: | 13-371 |
| Cow position: | chr9:23133789-23133439 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 73 |
| Conread position: | 13-371 |
| Cow position: | chr9:30200384-30200036 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 16-267 |
| Cow position: | chr9:61128052-61127809 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 112, 133 |
| Conread position: | 16-374 |
| Cow position: | chr9:8627634-8627285 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 153 |
| Conread position: | 17-191 |
| Cow position: | chr9:37289202-37289373 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 17-371 |
| Cow position: | chr9:7615631-7615977 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 153 |
| Conread position: | 17-371 |
| Cow position: | chr9:36712433-36712773 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 17-371 |
| Cow position: | chr9:42252372-42252721 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 25 |
| Conread position: | 17-375 |
| Cow position: | chr9:3436353-3436014 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 34 |
| Conread position: | 19-375 |
| Cow position: | chr9:27385424-27385796 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 156 |
| Conread position: | 19-378 |
| Cow position: | chr9:5701820-5701465 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 130 |
| Conread position: | 19-378 |
| Cow position: | chr9:49420700-49421037 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 19-387 |
| Cow position: | chr9:25032381-25032013 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 144 |
| Conread position: | 20-341 |
| Cow position: | chr9:25541194-25541532 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 155 |
| Conread position: | 20-375 |
| Cow position: | chr9:34047509-34047858 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 23-371 |
| Cow position: | chr9:1383710-1383367 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 154 |
| Conread position: | 27-316 |
| Cow position: | chr9:54359191-54358908 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 30-371 |
| Cow position: | chr9:40441165-40440813 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 143 |
| Conread position: | 30-374 |
| Cow position: | chr9:4968690-4968358 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 39-374 |
| Cow position: | chr9:22441357-22441033 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 108 |
| Conread position: | 44-345 |
| Cow position: | chr9:8082843-8083147 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 44-371 |
| Cow position: | chr9:7008638-7008964 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 131 |
| Conread position: | 44-371 |
| Cow position: | chr9:16864027-16863690 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 97 |
| Conread position: | 45-387 |
| Cow position: | chr9:20605713-20605381 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 96 |
| Conread position: | 46-391 |
| Cow position: | chr9:34402842-34402490 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 66, 113 |
| Conread position: | 53-391 |
| Cow position: | chr9:8596264-8596596 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 103 |
| Conread position: | 54-367 |
| Cow position: | chr9:5380741-5381063 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 87 |
| Conread position: | 149-332 |
| Cow position: | chr9:48187681-48187502 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 203-374 |
| Cow position: | chr9:61574322-61574492 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 94 |
| Conread position: | 203-391 |
| Cow position: | chr9:40082217-40082415 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 205-352 |
| Cow position: | chr9:48193627-48193777 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 210-371 |
| Cow position: | chr9:37289680-37289848 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 218-371 |
| Cow position: | chr9:1631221-1631071 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 83, 105 |
| Conread position: | 233-371 |
| Cow position: | chr9:28536306-28536167 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 241-391 |
| Cow position: | chr9:9598422-9598272 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 6 |
Show alignments to all cow chromosomes.