Cow genome map
| Conread name: | rpgl08_f5.y1 |
| Conread position: | 4-279 |
| Cow position: | chrX:39983215-39983482 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 4-391 |
| Cow position: | chrX:42416660-42417049 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 5-374 |
| Cow position: | chrX:42496657-42497012 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 6-391 |
| Cow position: | chrX:38630884-38630519 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 8-371 |
| Cow position: | chrX:25306950-25306602 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 15 |
| Conread position: | 8-371 |
| Cow position: | chrX:32979126-32978766 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 15 |
| Conread position: | 8-371 |
| Cow position: | chrX:37075217-37074884 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-371 |
| Cow position: | chrX:45769946-45769570 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 361 |
| Conread position: | 8-371 |
| Cow position: | chrX:45892774-45893131 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 15 |
| Conread position: | 12-176 |
| Cow position: | chrX:34861965-34862128 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 13-192 |
| Cow position: | chrX:47810256-47810441 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 13-259 |
| Cow position: | chrX:28641416-28641655 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 126, 14 |
| Conread position: | 13-371 |
| Cow position: | chrX:44117493-44117129 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 13-386 |
| Cow position: | chrX:26381761-26381398 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 13-391 |
| Cow position: | chrX:24394293-24394657 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 14-238 |
| Cow position: | chrX:48664829-48665046 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 15-371 |
| Cow position: | chrX:36090209-36090581 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 161 |
| Conread position: | 16-276 |
| Cow position: | chrX:47943492-47943740 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 132 |
| Conread position: | 16-370 |
| Cow position: | chrX:47331957-47331572 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 174 |
| Conread position: | 17-174 |
| Cow position: | chrX:29924422-29924268 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-267 |
| Cow position: | chrX:28698574-28698333 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 78 |
| Conread position: | 17-378 |
| Cow position: | chrX:31203687-31204057 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 351 |
| Conread position: | 18-391 |
| Cow position: | chrX:29145126-29144767 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 19-345 |
| Cow position: | chrX:30675074-30675397 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 27-378 |
| Cow position: | chrX:5414305-5414647 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 30-339 |
| Cow position: | chrX:28042597-28042295 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 34-371 |
| Cow position: | chrX:48401661-48401318 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 37-391 |
| Cow position: | chrX:19503200-19503539 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 44-172 |
| Cow position: | chrX:6393311-6393184 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 105, 75 |
| Conread position: | 46-371 |
| Cow position: | chrX:48016277-48015938 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 48-375 |
| Cow position: | chrX:34827114-34827421 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 54-371 |
| Cow position: | chrX:15267477-15267169 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 235, 42 |
| Conread position: | 87-362 |
| Cow position: | chrX:48265301-48265016 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 130-378 |
| Cow position: | chrX:28036752-28036985 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 204-391 |
| Cow position: | chrX:12275811-12275624 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 208-352 |
| Cow position: | chrX:39528429-39528572 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 208-369 |
| Cow position: | chrX:6393177-6393019 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 210-371 |
| Cow position: | chrX:47336324-47336162 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 147 |
| Conread position: | 221-369 |
| Cow position: | chrX:39861018-39861161 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 48 |
| Conread position: | 233-349 |
| Cow position: | chrX:831152-831032 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 234-371 |
| Cow position: | chrX:29919852-29919712 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 237-371 |
| Cow position: | chrX:42467445-42467310 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 119 |
Show alignments to all cow chromosomes.