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Cow genome map

           
Conread name:
           
rpgl10_d10.y1
        

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:68951562-68951708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:6788351-6788197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:30504436-30504601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:21823303-21823508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr1:34159772-34160035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:82378723-82378980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr1:95176870-95177126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr1:93228462-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-132
               

               
Cow position:
               
chr1:1991486-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
2-135
               

               
Cow position:
               
chr1:1165536-1165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr1:98311004-98311155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-150
               

               
Cow position:
               
chr1:63390835-63390681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr1:4374403-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr1:5023828-5023671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr1:70026408-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr1:55146738-55146895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr1:53425111-53425277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr1:43703343-43703511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:7971351-7971517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:39069019-39068850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:68672664-68672497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:81355773-81355597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:87936835-87937002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr1:100706069-100706235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
164, 85
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chr1:75141935-75142105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:4032564-4032743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:6240343-6240172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:24876197-24876373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:61542982-61542808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 105
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:65909463-65909621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:78068129-78067959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
164, 39
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:78697834-78697661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:81580105-81580288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:90976149-90975978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
167, 33
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr1:98575981-98576158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr1:52994956-52995138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr1:98594508-98594677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr1:11913947-11913767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr1:91811717-91811888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 94
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr1:63434870-63434694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chr1:77683293-77683466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr1:68676297-68676472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chr1:45288936-45288758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr1:58036954-58037150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:27145714-27145525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 123
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:28176945-28177132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:48730892-48730701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:81913219-81913023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:92684756-92684562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:98461223-98461416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr1:44769177-44768980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr1:93554774-93554971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr1:93810365-93810574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:4291096-4291322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:24534318-24534093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 101
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr1:49433325-49433088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
164, 41
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr1:71079022-71078789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 104
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr1:93528634-93528867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr1:45223515-45223769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 212
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr1:77720299-77720067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
166, 33
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr1:55357349-55357089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr1:100421768-100422020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
171, 33
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:31272505-31272253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:60281306-60281551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr1:96081416-96081681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:35162345-35162610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
40, 212
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:53374367-53374633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:75250047-75250317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr1:98583693-98583953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:47658283-47658554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr1:64804166-64803891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:186341-186074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:31934448-31934711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
169, 36
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:44506904-44507175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 214
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr1:69539633-69539892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:6972465-6972718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
164, 39
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:16855761-16855493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
162, 211
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:27114597-27114845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
166, 37
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:31390656-31390403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:68763747-68763476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:8552-8828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 217
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:24778050-24777775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:53622896-53623165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:65318512-65318787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:68862968-68863228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:86110795-86110536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 31
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:101632403-101632143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 224
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr1:102753788-102754059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 214
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr1:6304927-6304667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr1:34771568-34771289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr1:76019760-76019490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:20667806-20667539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 209
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:21787266-21787535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
39, 210
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:22525811-22526085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:22823839-22824120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:25281725-25281466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:30983555-30983281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:42541533-42541802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 210
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:48444258-48443980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 218
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:79165149-79164871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:91066217-91065946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:93110685-93110421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:100551905-100552177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 212
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:3923859-3923592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
164, 22
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:54199446-54199184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:56225723-56225994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr1:64302312-64302037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr1:54267998-54267724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
146, 26
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr1:52052785-52052518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
2-267
               

               
Cow position:
               
chr1:82513420-82513136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr1:10942162-10941878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:43352722-43352431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:52467237-52467501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr1:61564732-61564998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:42545850-42545582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 178
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:43340676-43340413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:50931041-50930758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:54156796-54156512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:96599345-96599084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:59518854-59519133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr1:43822336-43822602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr1:54478260-54478539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
40, 176
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr1:69695056-69694781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr1:74832362-74832667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr1:30189082-30189397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 278
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr1:98511865-98512037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:88618532-88618706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 171
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr1:3607747-3607992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr1:10778503-10778764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr1:29626975-29626701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:49317559-49317290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr1:75744797-75745071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 220
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:46030419-46030150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
146, 39
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:78079657-78079937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:78066602-78066324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 213
               

               
Conread position:
               
4-139
               

               
Cow position:
               
chr1:102647334-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chr1:89485514-89485666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr1:85550140-85549972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:99642428-99642196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr1:102349816-102349566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr1:48206598-48206336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:71350789-71350519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 216
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr1:74956083-74955824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:36998129-36998396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
162, 36
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:55429021-55428738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 219
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr1:81228404-81228113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
5-114
               

               
Cow position:
               
chr1:5384891-5384784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr1:6826356-6826188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
5-173
               

               
Cow position:
               
chr1:37309580-37309408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr1:43312094-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr1:53308455-53308253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chr1:88359819-88360091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr1:22730678-22730942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr1:100474170-100474449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
36, 220
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr1:48618301-48618036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
161, 52
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr1:70434936-70435197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
6-170
               

               
Cow position:
               
chr1:23512719-23512553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 148
               

               
Conread position:
               
6-172
               

               
Cow position:
               
chr1:77892080-77892244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
6-173
               

               
Cow position:
               
chr1:69264750-69264919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
6-173
               

               
Cow position:
               
chr1:95215241-95215079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
160, 34
               

               
Conread position:
               
6-175
               

               
Cow position:
               
chr1:8349377-8349214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr1:55818999-55819224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chr1:21560955-21561226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chr1:101834761-101835022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chr1:56477527-56477792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 209
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr1:102266330-102266056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
7-171
               

               
Cow position:
               
chr1:76436431-76436587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr1:87072636-87072922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
8-172
               

               
Cow position:
               
chr1:26702265-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr1:74927824-74927995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr1:99221413-99221244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 95
               

               
Conread position:
               
8-175
               

               
Cow position:
               
chr1:41252465-41252300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr1:92989531-92989729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr1:68127246-68126984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
8-259
               

               
Cow position:
               
chr1:19515673-19515409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:68618991-68618731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr1:95557978-95558248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 213
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr1:11172317-11172578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr1:62235506-62235246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:7752328-7752591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:19465998-19466247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
220, 41
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:25734810-25735079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:37726478-37726203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 214
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:51417714-51417976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr1:96365605-96365860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
8-263
               

               
Cow position:
               
chr1:7748162-7748428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr1:96964262-96964533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr1:39427060-39426798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
8-268
               

               
Cow position:
               
chr1:68826963-68826707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr1:71665991-71665715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
9-153
               

               
Cow position:
               
chr1:101946767-101946625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
9-173
               

               
Cow position:
               
chr1:8347066-8347234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr1:11729124-11729344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
156, 36
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr1:33998699-33998957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
10-153
               

               
Cow position:
               
chr1:85596885-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
10-171
               

               
Cow position:
               
chr1:3352754-3352593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr1:31357568-31357320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
32, 143
               

               
Conread position:
               
10-253
               

               
Cow position:
               
chr1:34856687-34856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
36, 213
               

               
Conread position:
               
10-262
               

               
Cow position:
               
chr1:1877973-1878234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chr1:72068895-72068619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
30, 215
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr1:42138800-42139053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 159
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr1:484522-484244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 214
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr1:54258506-54258785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 131
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:48581076-48581338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 205
               

               
Conread position:
               
11-262
               

               
Cow position:
               
chr1:82880589-82880842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
12-173
               

               
Cow position:
               
chr1:84768934-84768768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
13-174
               

               
Cow position:
               
chr1:69482005-69481838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
15-172
               

               
Cow position:
               
chr1:16962060-16961902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
15-271
               

               
Cow position:
               
chr1:76613188-76612915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 207
               

               
Conread position:
               
15-288
               

               
Cow position:
               
chr1:98467752-98468043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
17-173
               

               
Cow position:
               
chr1:81629895-81629739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-192
               

               
Cow position:
               
chr1:84203465-84203645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
19-260
               

               
Cow position:
               
chr1:83887-84120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
149, 73
               

               
Conread position:
               
23-262
               

               
Cow position:
               
chr1:40192737-40192492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
24-248
               

               
Cow position:
               
chr1:81582072-81582292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 155
               

               
Conread position:
               
24-261
               

               
Cow position:
               
chr1:6854347-6854109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
28-192
               

               
Cow position:
               
chr1:8670733-8670902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr1:95835836-95835580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
22, 192
               

               
Conread position:
               
29-258
               

               
Cow position:
               
chr1:17055957-17056197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
30-182
               

               
Cow position:
               
chr1:89835219-89835367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
31-173
               

               
Cow position:
               
chr1:28470794-28470941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 10
               

               
Conread position:
               
31-192
               

               
Cow position:
               
chr1:9143688-9143850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
31-252
               

               
Cow position:
               
chr1:98897725-98897489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
31-260
               

               
Cow position:
               
chr1:82936629-82936396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
161, 18
               

               
Conread position:
               
31-269
               

               
Cow position:
               
chr1:63530523-63530778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
15, 187
               

               
Conread position:
               
32-262
               

               
Cow position:
               
chr1:87095247-87095000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
5, 187
               

               
Conread position:
               
32-263
               

               
Cow position:
               
chr1:54289224-54288998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
198, 138
               

               
Conread position:
               
32-268
               

               
Cow position:
               
chr1:6166216-6166450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
33-258
               

               
Cow position:
               
chr1:85771978-85772211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
33-259
               

               
Cow position:
               
chr1:18414498-18414281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
34-258
               

               
Cow position:
               
chr1:8287660-8287423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
116, 181
               

               
Conread position:
               
34-271
               

               
Cow position:
               
chr1:874624-874885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
35-271
               

               
Cow position:
               
chr1:57089708-57089459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 113
               

               
Conread position:
               
36-169
               

               
Cow position:
               
chr1:102346064-102345930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
37-172
               

               
Cow position:
               
chr1:33996950-33996814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
37-256
               

               
Cow position:
               
chr1:42152513-42152284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
39-169
               

               
Cow position:
               
chr1:45478883-45478758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr1:95618617-95618842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
129, 175
               

               
Conread position:
               
39-258
               

               
Cow position:
               
chr1:7908012-7908232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
185, 132
               

               
Conread position:
               
40-164
               

               
Cow position:
               
chr1:51531729-51531851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
40-255
               

               
Cow position:
               
chr1:81858926-81858697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 175
               

               
Conread position:
               
40-256
               

               
Cow position:
               
chr1:81515210-81515444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
128, 5
               

               
Conread position:
               
40-262
               

               
Cow position:
               
chr1:67585536-67585762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
40-270
               

               
Cow position:
               
chr1:97144487-97144253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
40-271
               

               
Cow position:
               
chr1:54628878-54628634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
122, 177
               

               
Conread position:
               
41-173
               

               
Cow position:
               
chr1:97231937-97232071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
41-275
               

               
Cow position:
               
chr1:46245772-46245509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr1:88338645-88338856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
184, 118
               

               
Conread position:
               
42-260
               

               
Cow position:
               
chr1:67919113-67919337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
135, 166
               

               
Conread position:
               
43-482
               

               
Cow position:
               
chr1:52488001-52487550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 174
               

               
Conread position:
               
44-271
               

               
Cow position:
               
chr1:71295316-71295085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 171
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chr1:54157275-54157401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chr1:71916138-71916015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chr1:72286087-72285963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chr1:77880749-77880629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
45-173
               

               
Cow position:
               
chr1:3914937-3914808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
45-191
               

               
Cow position:
               
chr1:98413753-98413905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
45-241
               

               
Cow position:
               
chr1:21093098-21093309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 172
               

               
Conread position:
               
45-252
               

               
Cow position:
               
chr1:75382962-75383164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
185, 52
               

               
Conread position:
               
45-256
               

               
Cow position:
               
chr1:38706873-38706648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
120, 172
               

               
Conread position:
               
45-256
               

               
Cow position:
               
chr1:77739703-77739929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 172
               

               
Conread position:
               
45-257
               

               
Cow position:
               
chr1:31819092-31819309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
45-257
               

               
Cow position:
               
chr1:99570506-99570292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
45-258
               

               
Cow position:
               
chr1:88111856-88112053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
45-259
               

               
Cow position:
               
chr1:74084207-74083980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr1:5637078-5636863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 127
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr1:49980691-49980917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr1:67654339-67654116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 172
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr1:81481401-81481173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
121, 167
               

               
Conread position:
               
45-261
               

               
Cow position:
               
chr1:5006143-5006354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
183, 73
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr1:16061023-16060797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
116, 166
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr1:43286327-43286540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
133, 112
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr1:55229957-55230184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 166
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr1:92996910-92996674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 175
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr1:102468635-102468411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
45-263
               

               
Cow position:
               
chr1:67529036-67529268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
45-266
               

               
Cow position:
               
chr1:37322017-37321795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
45-270
               

               
Cow position:
               
chr1:528090-527861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
181, 29
               

               
Conread position:
               
45-271
               

               
Cow position:
               
chr1:24542588-24542350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
45-282
               

               
Cow position:
               
chr1:41027056-41027303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
46-257
               

               
Cow position:
               
chr1:101177497-101177729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
119, 176
               

               
Conread position:
               
46-258
               

               
Cow position:
               
chr1:38205456-38205658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
46-263
               

               
Cow position:
               
chr1:74081999-74081789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
182, 125
               

               
Conread position:
               
46-264
               

               
Cow position:
               
chr1:852152-852388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 172
               

               
Conread position:
               
46-271
               

               
Cow position:
               
chr1:66752647-66752412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 166
               

               
Conread position:
               
46-271
               

               
Cow position:
               
chr1:99322580-99322351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 99
               

               
Conread position:
               
47-169
               

               
Cow position:
               
chr1:43148565-43148440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
47-192
               

               
Cow position:
               
chr1:65881790-65881937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
47-227
               

               
Cow position:
               
chr1:69940840-69940651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 166
               

               
Conread position:
               
47-256
               

               
Cow position:
               
chr1:41289794-41289573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
115, 166
               

               
Conread position:
               
47-261
               

               
Cow position:
               
chr1:73721343-73721574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
110, 172
               

               
Conread position:
               
47-261
               

               
Cow position:
               
chr1:102648261-102648490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
119, 170
               

               
Conread position:
               
47-263
               

               
Cow position:
               
chr1:76735495-76735267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
47-266
               

               
Cow position:
               
chr1:26895828-26895595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 167
               

               
Conread position:
               
47-267
               

               
Cow position:
               
chr1:14206166-14205948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
131, 50
               

               
Conread position:
               
48-187
               

               
Cow position:
               
chr1:54732501-54732361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
48-253
               

               
Cow position:
               
chr1:2462367-2462573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr1:90267705-90267930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
48-258
               

               
Cow position:
               
chr1:242541-242759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
118, 162
               

               
Conread position:
               
49-173
               

               
Cow position:
               
chr1:45874093-45873959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
49-198
               

               
Cow position:
               
chr1:24561524-24561369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
49-198
               

               
Cow position:
               
chr1:24570962-24570807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
49-246
               

               
Cow position:
               
chr1:61011166-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
117, 160
               

               
Conread position:
               
49-262
               

               
Cow position:
               
chr1:39418126-39417920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
49-263
               

               
Cow position:
               
chr1:92075474-92075692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 87
               

               
Conread position:
               
49-271
               

               
Cow position:
               
chr1:23969067-23968846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
49-276
               

               
Cow position:
               
chr1:43311787-43311543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
50-186
               

               
Cow position:
               
chr1:85712426-85712566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
51-164
               

               
Cow position:
               
chr1:77265424-77265533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
52-252
               

               
Cow position:
               
chr1:51968525-51968728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
114, 161
               

               
Conread position:
               
52-262
               

               
Cow position:
               
chr1:4582538-4582762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
52-262
               

               
Cow position:
               
chr1:15333883-15334100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
114, 48
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr1:100450187-100449975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
53-173
               

               
Cow position:
               
chr1:64019532-64019410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
54-262
               

               
Cow position:
               
chr1:70538601-70538817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 156
               

               
Conread position:
               
57-271
               

               
Cow position:
               
chr1:41138151-41137927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
109, 154
               

               
Conread position:
               
59-257
               

               
Cow position:
               
chr1:99605192-99604986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 157
               

               
Conread position:
               
61-296
               

               
Cow position:
               
chr1:95156967-95156721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
107, 166
               

               
Conread position:
               
64-262
               

               
Cow position:
               
chr1:56913529-56913321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 154
               

               
Conread position:
               
64-271
               

               
Cow position:
               
chr1:4294344-4294564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
107, 153
               

               
Conread position:
               
65-271
               

               
Cow position:
               
chr1:32014199-32014411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
67-256
               

               
Cow position:
               
chr1:30948995-30949187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
67-262
               

               
Cow position:
               
chr1:11770232-11770031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
68-260
               

               
Cow position:
               
chr1:79663435-79663244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
71-256
               

               
Cow position:
               
chr1:63994548-63994350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 144
               

               
Conread position:
               
73-205
               

               
Cow position:
               
chr1:79409460-79409603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
73-271
               

               
Cow position:
               
chr1:45099769-45099972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
76-263
               

               
Cow position:
               
chr1:81638560-81638750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
92, 119
               

               
Conread position:
               
77-263
               

               
Cow position:
               
chr1:70416747-70416548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
77-271
               

               
Cow position:
               
chr1:40303564-40303768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 134
               

               
Conread position:
               
78-262
               

               
Cow position:
               
chr1:6836845-6836657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 153
               

               
Conread position:
               
79-271
               

               
Cow position:
               
chr1:32035695-32035493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
87, 138
               

               
Conread position:
               
81-263
               

               
Cow position:
               
chr1:63460895-63461090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
85-260
               

               
Cow position:
               
chr1:91796206-91796032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
88-250
               

               
Cow position:
               
chr1:96362401-96362239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
90-263
               

               
Cow position:
               
chr1:90390356-90390187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 73
               

               
Conread position:
               
98-257
               

               
Cow position:
               
chr1:66444994-66445162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
98-260
               

               
Cow position:
               
chr1:75227285-75227116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
101-261
               

               
Cow position:
               
chr1:84787307-84787470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
102-261
               

               
Cow position:
               
chr1:53474194-53474358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
102-264
               

               
Cow position:
               
chr1:30028194-30028019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
103-272
               

               
Cow position:
               
chr1:70044392-70044565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
105-260
               

               
Cow position:
               
chr1:74010953-74011098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
105-263
               

               
Cow position:
               
chr1:40284598-40284437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 66
               

               
Conread position:
               
114-271
               

               
Cow position:
               
chr1:3034149-3033989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
120-269
               

               
Cow position:
               
chr1:37503815-37503666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
171-262
               

               
Cow position:
               
chr1:49754129-49754221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 34
               
Show alignments to all cow chromosomes.