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Cow genome map

           
Conread name:
           
rpgl10_d10.y1
        

               
Conread position:
               
1-169
               

               
Cow position:
               
chr11:67246703-67246867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr11:9221817-9221646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr11:48474614-48474791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr11:67804664-67804915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
140, 27
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr11:2084052-2084335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 222
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr11:41134154-41133889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr11:50236068-50235795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr11:38334435-38334724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 216
               

               
Conread position:
               
2-119
               

               
Cow position:
               
chr11:21428081-21427961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
2-124
               

               
Cow position:
               
chr11:8339496-8339369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-124
               

               
Cow position:
               
chr11:27386430-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-124
               

               
Cow position:
               
chr11:36114071-36114193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
2-126
               

               
Cow position:
               
chr11:48042124-48041994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-144
               

               
Cow position:
               
chr11:18341129-18340984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr11:61858991-61858838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr11:47004253-47004416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr11:40258496-40258336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chr11:75965738-75965576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr11:5031862-5031699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr11:46952866-46953029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr11:6202358-6202525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr11:21438127-21438291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr11:32436243-32436415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr11:48649893-48650054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr11:63482514-63482348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr11:16907132-16906967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr11:64868103-64867937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
164, 38
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:1362564-1362380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:7013832-7013659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:23232604-23232432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:33526965-33527140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:36799390-36799220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:62778358-62778529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr11:73512525-73512356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr11:4653066-4652886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 177
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr11:33753991-33753825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr11:41176038-41175857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr11:22499452-22499274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr11:55333823-55334004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 170
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr11:52983588-52983770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 165
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr11:50072859-50073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
175, 36
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr11:61958833-61958635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr11:71501220-71501024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr11:83230485-83230297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
175, 83
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr11:17831309-17831112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr11:43430545-43430350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr11:63847760-63847953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr11:36658909-36658712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 100
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr11:40478938-40478739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chr11:64638617-64638412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr11:7590105-7590312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr11:70086240-70086463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chr11:59872843-59873059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr11:20602133-20602363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr11:35926995-35926760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr11:85703618-85703840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr11:28993820-28993577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
2-244
               

               
Cow position:
               
chr11:73354142-73353896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr11:4199184-4199453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr11:46998896-46999166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr11:48659843-48660112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 216
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr11:67615335-67615069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:6233968-6233694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
37, 219
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:41986132-41985864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 212
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:48306434-48306192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:48932673-48932405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:62742722-62742464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr11:77546329-77546580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 170
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr11:6194319-6194573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr11:83032593-83032862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 213
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr11:18572713-18572969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr11:32398548-32398827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr11:63434144-63433879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 153
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr11:43360871-43360600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr11:46746543-46746823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 224
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr11:70978819-70978548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
173, 160
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr11:72375774-72375479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 237
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr11:80413100-80412822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr11:41603778-41603513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr11:51729199-51729462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 204
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr11:55761782-55762044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr11:67600694-67600966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 213
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:11125574-11125854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:13043234-13042959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 215
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:19946347-19946610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:33348272-33348009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:42083384-42083642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:47837225-47837510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:49152863-49153129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:66188411-66188132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
40, 221
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr11:71492943-71492675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
163, 40
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:4663134-4662873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 188
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:9368738-9368996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:12111542-12111286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:16540773-16541025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 170
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:27719411-27719149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 106
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:54134160-54133917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
227, 33
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:57873741-57873998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr11:75874840-75874582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
226, 164
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr11:52690610-52690332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr11:70206233-70206508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr11:77705667-77705946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr11:18509105-18508832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
166, 47
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chr11:29659474-29659755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 215
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:13499928-13500208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:15772803-15772515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 100
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:42066770-42067061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:65826830-65826557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:67871693-67871425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:68913054-68913338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 218
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr11:70756393-70756673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr11:69977887-69978165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 31
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr11:71341553-71341378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr11:76606588-76606759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr11:65495413-65495155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
163, 42
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr11:22977958-22977688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
162, 231
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr11:57170916-57170791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr11:42044080-42043915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr11:36986869-36987037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
160, 56
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr11:83033323-83033152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
4-174
               

               
Cow position:
               
chr11:76114564-76114731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr11:45898139-45897944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr11:49934823-49934592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 176
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr11:25791777-25791509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr11:49148953-49149233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr11:43646501-43646242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr11:65607777-65607501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 213
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:8988313-8988032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
161, 117
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr11:53778529-53778817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 220
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr11:18484257-18484012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr11:31227877-31228142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 209
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chr11:84890806-84890535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 133
               

               
Conread position:
               
6-147
               

               
Cow position:
               
chr11:4430212-4430076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr11:8840830-8840669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
6-174
               

               
Cow position:
               
chr11:23586551-23586727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 167
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr11:63687700-63687485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chr11:71009048-71009278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr11:18144903-18144656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
6-269
               

               
Cow position:
               
chr11:17493392-17493678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 221
               

               
Conread position:
               
8-153
               

               
Cow position:
               
chr11:3233999-3234141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
8-160
               

               
Cow position:
               
chr11:49231791-49231946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr11:26483632-26483785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
8-169
               

               
Cow position:
               
chr11:35573571-35573410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
8-169
               

               
Cow position:
               
chr11:56734546-56734711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
8-170
               

               
Cow position:
               
chr11:55203542-55203377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr11:3739870-3740041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
8-175
               

               
Cow position:
               
chr11:15373765-15373926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
8-176
               

               
Cow position:
               
chr11:72333510-72333676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
8-192
               

               
Cow position:
               
chr11:38577855-38577670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr11:71345404-71345218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
8-216
               

               
Cow position:
               
chr11:18244020-18243805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr11:62889974-62889741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 211
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr11:41313739-41313482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 206
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr11:6245240-6245505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr11:13592654-13592923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
38, 218
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr11:50472235-50472502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr11:64029344-64029083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr11:67912235-67911980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr11:37919127-37918859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 207
               

               
Conread position:
               
8-263
               

               
Cow position:
               
chr11:42359030-42359283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr11:30475920-30476193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr11:40459029-40459306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr11:64104914-64105201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
8-289
               

               
Cow position:
               
chr11:63065577-63065865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
9-155
               

               
Cow position:
               
chr11:70273224-70273374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
9-173
               

               
Cow position:
               
chr11:33345362-33345533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr11:81406240-81406016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:27565254-27565486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 97
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr11:70825870-70826035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
10-192
               

               
Cow position:
               
chr11:39118672-39118864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr11:53510582-53510353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr11:63202328-63202096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr11:36112345-36112597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
10-262
               

               
Cow position:
               
chr11:9270806-9270549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr11:71935035-71934756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr11:30708424-30708703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 210
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr11:41215662-41215929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr11:84385716-84385444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr11:18785951-18785708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
12-270
               

               
Cow position:
               
chr11:31875012-31875286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 211
               

               
Conread position:
               
13-256
               

               
Cow position:
               
chr11:38236174-38236428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 206
               

               
Conread position:
               
13-271
               

               
Cow position:
               
chr11:64048328-64048589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
34, 179
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr11:36920656-36920406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 211
               

               
Conread position:
               
15-278
               

               
Cow position:
               
chr11:19247275-19247001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
19-271
               

               
Cow position:
               
chr11:17889797-17889529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
19-271
               

               
Cow position:
               
chr11:26144168-26143896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 203
               

               
Conread position:
               
20-271
               

               
Cow position:
               
chr11:57608527-57608268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
23-256
               

               
Cow position:
               
chr11:78381126-78380886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
25-260
               

               
Cow position:
               
chr11:30639013-30638765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 190
               

               
Conread position:
               
26-164
               

               
Cow position:
               
chr11:63909727-63909590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
28-173
               

               
Cow position:
               
chr11:6633654-6633798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
30-252
               

               
Cow position:
               
chr11:46747918-46747680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
138, 188
               

               
Conread position:
               
30-261
               

               
Cow position:
               
chr11:44222832-44223069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
136, 71
               

               
Conread position:
               
32-256
               

               
Cow position:
               
chr11:48512110-48512326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
199, 17
               

               
Conread position:
               
32-264
               

               
Cow position:
               
chr11:41272084-41272310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
199, 19
               

               
Conread position:
               
32-268
               

               
Cow position:
               
chr11:30808648-30808401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
33-270
               

               
Cow position:
               
chr11:18447546-18447307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
132, 174
               

               
Conread position:
               
34-262
               

               
Cow position:
               
chr11:27913232-27913475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
35-174
               

               
Cow position:
               
chr11:41809545-41809404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
35-269
               

               
Cow position:
               
chr11:39249919-39250161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
5, 118
               

               
Conread position:
               
36-271
               

               
Cow position:
               
chr11:16320235-16320466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
222, 44
               

               
Conread position:
               
37-172
               

               
Cow position:
               
chr11:7307582-7307718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
37-261
               

               
Cow position:
               
chr11:36647297-36647515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 60
               

               
Conread position:
               
39-150
               

               
Cow position:
               
chr11:65624841-65624731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
39-262
               

               
Cow position:
               
chr11:897625-897853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
127, 177
               

               
Conread position:
               
40-169
               

               
Cow position:
               
chr11:34692806-34692936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
40-253
               

               
Cow position:
               
chr11:58927537-58927748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
40-258
               

               
Cow position:
               
chr11:78820107-78820334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
40-265
               

               
Cow position:
               
chr11:68883671-68883911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 178
               

               
Conread position:
               
41-173
               

               
Cow position:
               
chr11:45849546-45849410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
41-174
               

               
Cow position:
               
chr11:29946960-29946825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
43-270
               

               
Cow position:
               
chr11:1380631-1380875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
119, 175
               

               
Conread position:
               
44-248
               

               
Cow position:
               
chr11:16801995-16801803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
45-169
               

               
Cow position:
               
chr11:82289540-82289660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
45-172
               

               
Cow position:
               
chr11:17321605-17321737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 79
               

               
Conread position:
               
45-173
               

               
Cow position:
               
chr11:82731040-82730910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
45-189
               

               
Cow position:
               
chr11:62754361-62754214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
45-252
               

               
Cow position:
               
chr11:38211603-38211820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 201
               

               
Conread position:
               
45-255
               

               
Cow position:
               
chr11:24601922-24602141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 167
               

               
Conread position:
               
45-257
               

               
Cow position:
               
chr11:8584285-8584500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
149, 92
               

               
Conread position:
               
45-258
               

               
Cow position:
               
chr11:29677160-29677391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
45-259
               

               
Cow position:
               
chr11:80616201-80616401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
120, 80
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr11:35669994-35669779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
121, 99
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr11:51196117-51195910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr11:27462140-27461922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 67
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr11:28078461-28078678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr11:42160097-42159873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
45-263
               

               
Cow position:
               
chr11:63484904-63485122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
45-266
               

               
Cow position:
               
chr11:84977401-84977182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 165
               

               
Conread position:
               
45-270
               

               
Cow position:
               
chr11:71854321-71854084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 144
               

               
Conread position:
               
45-271
               

               
Cow position:
               
chr11:1067482-1067239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
120, 173
               

               
Conread position:
               
45-271
               

               
Cow position:
               
chr11:77013742-77013968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
46-169
               

               
Cow position:
               
chr11:56654514-56654638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
46-169
               

               
Cow position:
               
chr11:62155597-62155720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
46-175
               

               
Cow position:
               
chr11:77128619-77128747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
47-155
               

               
Cow position:
               
chr11:30925116-30925225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
47-167
               

               
Cow position:
               
chr11:71482339-71482459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
47-169
               

               
Cow position:
               
chr11:34106710-34106588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
47-242
               

               
Cow position:
               
chr11:39855054-39854853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
47-250
               

               
Cow position:
               
chr11:29786539-29786316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
119, 175
               

               
Conread position:
               
48-258
               

               
Cow position:
               
chr11:46427447-46427222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 177
               

               
Conread position:
               
48-262
               

               
Cow position:
               
chr11:83043402-83043178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
118, 164
               

               
Conread position:
               
48-265
               

               
Cow position:
               
chr11:72869857-72869650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
180, 106
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr11:18608276-18608132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
51-199
               

               
Cow position:
               
chr11:58938781-58938629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
53-276
               

               
Cow position:
               
chr11:32260500-32260736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
54-291
               

               
Cow position:
               
chr11:62789097-62789349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
112, 159
               

               
Conread position:
               
56-257
               

               
Cow position:
               
chr11:31537471-31537264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
57-260
               

               
Cow position:
               
chr11:21728306-21728102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 49
               

               
Conread position:
               
57-264
               

               
Cow position:
               
chr11:259202-258981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
109, 155
               

               
Conread position:
               
66-262
               

               
Cow position:
               
chr11:52832742-52832557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
69-260
               

               
Cow position:
               
chr11:46784456-46784650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
71-255
               

               
Cow position:
               
chr11:21830226-21830029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
97, 144
               

               
Conread position:
               
71-271
               

               
Cow position:
               
chr11:18119485-18119698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
73-257
               

               
Cow position:
               
chr11:86895362-86895556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 137
               

               
Conread position:
               
73-261
               

               
Cow position:
               
chr11:77241692-77241890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
77-260
               

               
Cow position:
               
chr11:17074229-17074041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
77-262
               

               
Cow position:
               
chr11:19549474-19549666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
78-296
               

               
Cow position:
               
chr11:49396535-49396303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 143
               

               
Conread position:
               
80-271
               

               
Cow position:
               
chr11:7571617-7571818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 132
               

               
Conread position:
               
83-271
               

               
Cow position:
               
chr11:33368078-33368268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
84-253
               

               
Cow position:
               
chr11:64023103-64022930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
84-257
               

               
Cow position:
               
chr11:79666265-79666078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
81, 133
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr11:25721993-25721816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
88-263
               

               
Cow position:
               
chr11:58185883-58186062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
88-271
               

               
Cow position:
               
chr11:42206422-42206613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr11:36092916-36092693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 134
               

               
Conread position:
               
91-270
               

               
Cow position:
               
chr11:59744010-59744197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
97-259
               

               
Cow position:
               
chr11:38223778-38223608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 58
               

               
Conread position:
               
97-262
               

               
Cow position:
               
chr11:13405023-13404861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 74
               

               
Conread position:
               
101-261
               

               
Cow position:
               
chr11:80296839-80296671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
101-262
               

               
Cow position:
               
chr11:74839624-74839792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
102-257
               

               
Cow position:
               
chr11:35276284-35276435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
102-262
               

               
Cow position:
               
chr11:15591460-15591291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
102-265
               

               
Cow position:
               
chr11:62483947-62483783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 102
               

               
Conread position:
               
110-280
               

               
Cow position:
               
chr11:57170578-57170403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
118-260
               

               
Cow position:
               
chr11:2937633-2937485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
121-260
               

               
Cow position:
               
chr11:27386002-27385866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
122-262
               

               
Cow position:
               
chr11:35849103-35848953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
126-256
               

               
Cow position:
               
chr11:3267617-3267485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 78
               
Show alignments to all cow chromosomes.