Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 4-188 |
| Cow position: | chr1:81580251-81580063 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 4-230 |
| Cow position: | chr1:77683426-77683201 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 4-232 |
| Cow position: | chr1:101632263-101632497 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 4-260 |
| Cow position: | chr1:43703483-43703226 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 106 |
| Conread position: | 4-276 |
| Cow position: | chr1:19885455-19885179 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 4-277 |
| Cow position: | chr1:28563495-28563772 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 4-288 |
| Cow position: | chr1:89485654-89485370 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-293 |
| Cow position: | chr1:6304790-6305088 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 4-299 |
| Cow position: | chr1:87072770-87072479 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 4-300 |
| Cow position: | chr1:15333965-15333655 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 4-303 |
| Cow position: | chr1:56635172-56634869 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 4-318 |
| Cow position: | chr1:28177078-28176756 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 4-319 |
| Cow position: | chr1:8689-8377 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 4-319 |
| Cow position: | chr1:8349251-8349556 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 4-319 |
| Cow position: | chr1:39418037-39418363 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 28, 147 |
| Conread position: | 4-319 |
| Cow position: | chr1:45288797-45289118 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 4-319 |
| Cow position: | chr1:50930905-50931214 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 4-319 |
| Cow position: | chr1:79165009-79165337 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 4-319 |
| Cow position: | chr1:81355629-81355948 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 4-319 |
| Cow position: | chr1:95177012-95176690 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 4-319 |
| Cow position: | chr1:99642295-99642615 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 4-319 |
| Cow position: | chr1:102349676-102350003 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-331 |
| Cow position: | chr1:100324675-100324984 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 4-339 |
| Cow position: | chr1:48444120-48444447 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 5-230 |
| Cow position: | chr1:93554909-93554687 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 5-306 |
| Cow position: | chr1:49317423-49317745 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 5-313 |
| Cow position: | chr1:90868368-90868675 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 5-331 |
| Cow position: | chr1:20000675-20001007 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 6-230 |
| Cow position: | chr1:97696816-97696584 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 6-244 |
| Cow position: | chr1:49077259-49077512 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 6-262 |
| Cow position: | chr1:91039102-91039367 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 6-292 |
| Cow position: | chr1:68845418-68845704 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 92, 27 |
| Conread position: | 6-292 |
| Cow position: | chr1:81228261-81228558 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 6-303 |
| Cow position: | chr1:4291236-4290929 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 6-303 |
| Cow position: | chr1:68618859-68619165 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 6-303 |
| Cow position: | chr1:85597010-85596715 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 6-307 |
| Cow position: | chr1:10942022-10942325 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 6-319 |
| Cow position: | chr1:2075279-2075573 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 6-319 |
| Cow position: | chr1:4032704-4032389 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 6-319 |
| Cow position: | chr1:53374505-53374190 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 6-319 |
| Cow position: | chr1:61735363-61735684 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 6-331 |
| Cow position: | chr1:65103692-65103377 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 6-331 |
| Cow position: | chr1:74084119-74084449 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 138 |
| Conread position: | 7-263 |
| Cow position: | chr1:724811-724543 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 7-302 |
| Cow position: | chr1:52052646-52052932 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 9-295 |
| Cow position: | chr1:52956320-52956038 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 11-331 |
| Cow position: | chr1:76019629-76019934 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 15-319 |
| Cow position: | chr1:3323931-3323613 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 15-320 |
| Cow position: | chr1:57639452-57639766 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 29-303 |
| Cow position: | chr1:43447782-43448053 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 31-303 |
| Cow position: | chr1:68951669-68951402 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 124, 9 |
| Conread position: | 31-317 |
| Cow position: | chr1:45535752-45535459 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 37-319 |
| Cow position: | chr1:38544425-38544692 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 43-319 |
| Cow position: | chr1:84239078-84239352 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 58-268 |
| Cow position: | chr1:81471149-81470932 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 58-275 |
| Cow position: | chr1:68863051-68862831 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 58-319 |
| Cow position: | chr1:1802157-1801899 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 58-319 |
| Cow position: | chr1:3244866-3244605 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 58-331 |
| Cow position: | chr1:56748617-56748332 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 85 |
| Conread position: | 58-331 |
| Cow position: | chr1:78794720-78794993 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 59-313 |
| Cow position: | chr1:37706955-37707208 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 81 |
| Conread position: | 59-319 |
| Cow position: | chr1:61564813-61564546 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 62-319 |
| Cow position: | chr1:68826892-68827150 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 77-303 |
| Cow position: | chr1:73761357-73761581 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 78-293 |
| Cow position: | chr1:45673711-45673492 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 79-313 |
| Cow position: | chr1:40531115-40531348 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 79-347 |
| Cow position: | chr1:71045750-71045485 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 89-225 |
| Cow position: | chr1:65909515-65909375 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 90-317 |
| Cow position: | chr1:29900986-29901200 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 90-319 |
| Cow position: | chr1:99095348-99095118 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 91-267 |
| Cow position: | chr1:51654397-51654215 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 94-312 |
| Cow position: | chr1:24597640-24597414 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 95-319 |
| Cow position: | chr1:23633929-23634145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 96-308 |
| Cow position: | chr1:55357305-55357520 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 98-302 |
| Cow position: | chr1:78809859-78809655 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 102-321 |
| Cow position: | chr1:56643615-56643836 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 116-302 |
| Cow position: | chr1:7450091-7449903 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 40 |
Show alignments to all cow chromosomes.