Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-215 |
| Cow position: | chr11:8544962-8545175 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 1-229 |
| Cow position: | chr11:47004404-47004171 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 156 |
| Conread position: | 1-275 |
| Cow position: | chr11:32436389-32436099 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 6, 140 |
| Conread position: | 1-292 |
| Cow position: | chr11:30925212-30924909 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 148 |
| Conread position: | 3-228 |
| Cow position: | chr11:34646641-34646413 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 4-208 |
| Cow position: | chr11:63435571-63435362 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 4-214 |
| Cow position: | chr11:66572447-66572663 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 4-225 |
| Cow position: | chr11:28993687-28993904 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 4-263 |
| Cow position: | chr11:52983726-52983474 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 4-266 |
| Cow position: | chr11:23586689-23586416 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-271 |
| Cow position: | chr11:53512133-53511860 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 4-281 |
| Cow position: | chr11:42043945-42044223 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 136, 145 |
| Conread position: | 4-291 |
| Cow position: | chr11:82940574-82940860 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 99, 29 |
| Conread position: | 4-302 |
| Cow position: | chr11:16342178-16342495 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 4-308 |
| Cow position: | chr11:42359165-42358865 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-313 |
| Cow position: | chr11:11125714-11125398 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 4-313 |
| Cow position: | chr11:50152763-50153082 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 107 |
| Conread position: | 4-319 |
| Cow position: | chr11:377591-377921 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 4-319 |
| Cow position: | chr11:33341094-33341416 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 4-319 |
| Cow position: | chr11:34963120-34962792 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 189 |
| Conread position: | 4-319 |
| Cow position: | chr11:45631715-45632035 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 4-319 |
| Cow position: | chr11:62150843-62151152 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 4-320 |
| Cow position: | chr11:11232405-11232726 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 4-331 |
| Cow position: | chr11:67600835-67600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 4-331 |
| Cow position: | chr11:80530409-80530089 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 148, 25 |
| Conread position: | 5-225 |
| Cow position: | chr11:30830564-30830791 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 152 |
| Conread position: | 5-283 |
| Cow position: | chr11:4662997-4663273 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 5-297 |
| Cow position: | chr11:2084193-2083899 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 6-266 |
| Cow position: | chr11:15772665-15772942 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 6-291 |
| Cow position: | chr11:18340992-18341281 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 6-307 |
| Cow position: | chr11:36940547-36940859 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 6-319 |
| Cow position: | chr11:1380724-1380424 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 6-319 |
| Cow position: | chr11:13500064-13499744 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 6-319 |
| Cow position: | chr11:30708555-30708233 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 6-319 |
| Cow position: | chr11:63469924-63469613 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 6-319 |
| Cow position: | chr11:70382642-70382965 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 6-319 |
| Cow position: | chr11:80787858-80788181 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 6-331 |
| Cow position: | chr11:43430408-43430730 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 21-319 |
| Cow position: | chr11:62155672-62155360 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 23-319 |
| Cow position: | chr11:10076800-10076504 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 9, 76 |
| Conread position: | 31-257 |
| Cow position: | chr11:57170808-57171032 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 73 |
| Conread position: | 31-319 |
| Cow position: | chr11:7924567-7924859 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 39-199 |
| Cow position: | chr11:49057417-49057256 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 39-319 |
| Cow position: | chr11:62979504-62979207 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 44-319 |
| Cow position: | chr11:68909839-68910118 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 48-241 |
| Cow position: | chr11:33468713-33468522 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 48-317 |
| Cow position: | chr11:9837094-9837366 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 48-319 |
| Cow position: | chr11:26535776-26535505 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 48-319 |
| Cow position: | chr11:53130818-53130542 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 51-319 |
| Cow position: | chr11:70609790-70609517 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 57-319 |
| Cow position: | chr11:58102781-58103045 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 57-331 |
| Cow position: | chr11:9221733-9222007 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 117, 5 |
| Conread position: | 58-258 |
| Cow position: | chr11:65607699-65607905 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 58-309 |
| Cow position: | chr11:63516820-63516562 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 58-319 |
| Cow position: | chr11:17112639-17112897 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 58-319 |
| Cow position: | chr11:30110955-30110701 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 174, 37 |
| Conread position: | 59-319 |
| Cow position: | chr11:48697440-48697177 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 61-319 |
| Cow position: | chr11:49106047-49105788 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 34 |
| Conread position: | 63-319 |
| Cow position: | chr11:45282916-45282666 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 60 |
| Conread position: | 71-319 |
| Cow position: | chr11:43914195-43913952 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 84-319 |
| Cow position: | chr11:18509046-18509279 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 88-331 |
| Cow position: | chr11:7333757-7334005 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 92-318 |
| Cow position: | chr11:74929746-74929511 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 94-319 |
| Cow position: | chr11:51043972-51044207 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 94-319 |
| Cow position: | chr11:68570707-68570942 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 95-319 |
| Cow position: | chr11:48932627-48932853 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 95-322 |
| Cow position: | chr11:75748391-75748162 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 97-318 |
| Cow position: | chr11:65495370-65495597 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 71, 145 |
| Conread position: | 102-319 |
| Cow position: | chr11:57111356-57111578 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 106-303 |
| Cow position: | chr11:78820044-78819858 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 34 |
Show alignments to all cow chromosomes.