Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-319 |
| Cow position: | chr12:6410699-6411018 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 2-219 |
| Cow position: | chr12:18420502-18420283 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 143 |
| Conread position: | 4-229 |
| Cow position: | chr12:33851387-33851159 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-268 |
| Cow position: | chr12:24211437-24211175 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 4-302 |
| Cow position: | chr12:34465974-34466275 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 28, 219 |
| Conread position: | 4-313 |
| Cow position: | chr12:5906086-5905773 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 4-319 |
| Cow position: | chr12:5714659-5714339 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 4-319 |
| Cow position: | chr12:9914819-9914499 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 4-319 |
| Cow position: | chr12:30170699-30170377 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 4-319 |
| Cow position: | chr12:31959909-31959603 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 4-320 |
| Cow position: | chr12:35368672-35368352 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 4-360 |
| Cow position: | chr12:20479308-20479645 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 299, 29 |
| Conread position: | 4-363 |
| Cow position: | chr12:34007331-34006967 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 5-256 |
| Cow position: | chr12:3906502-3906239 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 5-318 |
| Cow position: | chr12:30753748-30753438 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 5-322 |
| Cow position: | chr12:2711527-2711199 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 6-188 |
| Cow position: | chr12:38126496-38126676 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 6-258 |
| Cow position: | chr12:25280474-25280721 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 6-303 |
| Cow position: | chr12:18572652-18572367 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 6-318 |
| Cow position: | chr12:40910257-40910579 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 6-318 |
| Cow position: | chr12:42967023-42966712 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 6-354 |
| Cow position: | chr12:8868854-8869207 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 25 |
| Conread position: | 7-262 |
| Cow position: | chr12:4162336-4162606 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 139 |
| Conread position: | 11-337 |
| Cow position: | chr12:7978060-7977736 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 12-308 |
| Cow position: | chr12:31429549-31429839 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 31-319 |
| Cow position: | chr12:27563376-27563667 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 31-336 |
| Cow position: | chr12:44595809-44596121 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 39-372 |
| Cow position: | chr12:30805846-30805508 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 48-265 |
| Cow position: | chr12:30476464-30476239 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 49-319 |
| Cow position: | chr12:2670247-2669987 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 103, 88 |
| Conread position: | 49-319 |
| Cow position: | chr12:30590745-30590487 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 166, 46 |
| Conread position: | 58-313 |
| Cow position: | chr12:19715064-19715311 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 58-349 |
| Cow position: | chr12:28650929-28650637 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 61-297 |
| Cow position: | chr12:17702257-17702501 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 77-260 |
| Cow position: | chr12:38511883-38512075 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 78-252 |
| Cow position: | chr12:44559540-44559361 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 84-319 |
| Cow position: | chr12:5800983-5800748 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 89-347 |
| Cow position: | chr12:19697345-19697101 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 94-331 |
| Cow position: | chr12:18021533-18021271 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 98-337 |
| Cow position: | chr12:11583329-11583095 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 102-331 |
| Cow position: | chr12:9413852-9414069 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 106-318 |
| Cow position: | chr12:40110309-40110100 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 106-319 |
| Cow position: | chr12:40270166-40270376 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 107-282 |
| Cow position: | chr12:6226725-6226900 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 48, 33 |
Show alignments to all cow chromosomes.