Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-230 |
| Cow position: | chr13:13238489-13238725 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 137 |
| Conread position: | 1-268 |
| Cow position: | chr13:15991318-15991034 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 1-286 |
| Cow position: | chr13:9593417-9593711 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 145 |
| Conread position: | 1-319 |
| Cow position: | chr13:20271312-20270979 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 1-329 |
| Cow position: | chr13:36771509-36771178 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 4-258 |
| Cow position: | chr13:49022951-49022692 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-261 |
| Cow position: | chr13:5758425-5758164 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 4-301 |
| Cow position: | chr13:45073997-45073716 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 4-303 |
| Cow position: | chr13:43762085-43762386 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 4-307 |
| Cow position: | chr13:15192969-15192669 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 4-311 |
| Cow position: | chr13:15289004-15288697 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 4-313 |
| Cow position: | chr13:18243779-18244087 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-313 |
| Cow position: | chr13:47964264-47963970 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 148, 29 |
| Conread position: | 4-318 |
| Cow position: | chr13:51940651-51940965 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-319 |
| Cow position: | chr13:6153867-6153542 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 4-319 |
| Cow position: | chr13:8524701-8524384 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 4-319 |
| Cow position: | chr13:60973996-60974312 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-322 |
| Cow position: | chr13:21275776-21276095 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 4-349 |
| Cow position: | chr13:9265910-9265551 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 5-249 |
| Cow position: | chr13:29831513-29831265 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 5-294 |
| Cow position: | chr13:15529118-15528819 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 6-213 |
| Cow position: | chr13:28552507-28552724 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 6-214 |
| Cow position: | chr13:25579271-25579058 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-247 |
| Cow position: | chr13:18999454-18999707 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 6-282 |
| Cow position: | chr13:52749551-52749288 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 6-286 |
| Cow position: | chr13:37593028-37592734 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 6-298 |
| Cow position: | chr13:37521825-37521516 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 281 |
| Conread position: | 6-302 |
| Cow position: | chr13:15282016-15281717 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 6-313 |
| Cow position: | chr13:20562912-20563228 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-317 |
| Cow position: | chr13:10925002-10924671 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 6-317 |
| Cow position: | chr13:15885103-15884779 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 6-318 |
| Cow position: | chr13:44626287-44626616 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 6-319 |
| Cow position: | chr13:8362824-8362509 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 6-319 |
| Cow position: | chr13:13176569-13176886 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 6-319 |
| Cow position: | chr13:17613259-17613583 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 6-319 |
| Cow position: | chr13:20606198-20605882 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 6-346 |
| Cow position: | chr13:20650068-20649725 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 132 |
| Conread position: | 6-364 |
| Cow position: | chr13:15621729-15622087 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 9-313 |
| Cow position: | chr13:2413951-2414256 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 11-302 |
| Cow position: | chr13:21039675-21039378 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 13-319 |
| Cow position: | chr13:5091740-5091424 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 15-352 |
| Cow position: | chr13:41253549-41253885 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 16-306 |
| Cow position: | chr13:4463941-4464231 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 20-318 |
| Cow position: | chr13:2463302-2462995 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 143 |
| Conread position: | 21-303 |
| Cow position: | chr13:17745177-17745460 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 33-288 |
| Cow position: | chr13:46111913-46112173 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 44-319 |
| Cow position: | chr13:17158915-17158629 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 49-286 |
| Cow position: | chr13:9800474-9800707 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 57-308 |
| Cow position: | chr13:37946232-37945990 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 58-303 |
| Cow position: | chr13:61990360-61990112 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 58-313 |
| Cow position: | chr13:5752453-5752192 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 101, 79 |
| Conread position: | 58-313 |
| Cow position: | chr13:54093720-54093971 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 58-316 |
| Cow position: | chr13:30026084-30026347 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 58-317 |
| Cow position: | chr13:34052614-34052367 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 154, 37 |
| Conread position: | 58-319 |
| Cow position: | chr13:1011306-1011569 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 58-319 |
| Cow position: | chr13:19178249-19178513 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 58-319 |
| Cow position: | chr13:20041995-20041720 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 59-313 |
| Cow position: | chr13:43194151-43194406 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 59-322 |
| Cow position: | chr13:41155058-41154806 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 71-312 |
| Cow position: | chr13:13265794-13266031 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 103, 81 |
| Conread position: | 71-319 |
| Cow position: | chr13:16024577-16024825 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 72-303 |
| Cow position: | chr13:20531160-20530923 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 80, 63 |
| Conread position: | 72-319 |
| Cow position: | chr13:15869112-15869356 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 79-319 |
| Cow position: | chr13:52178104-52178335 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 90-319 |
| Cow position: | chr13:8607514-8607282 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 93-268 |
| Cow position: | chr13:5079214-5079037 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 97-303 |
| Cow position: | chr13:60690715-60690501 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 99-295 |
| Cow position: | chr13:15162638-15162452 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 44 |
Show alignments to all cow chromosomes.