Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-238 |
| Cow position: | chr16:12274141-12273898 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 1-319 |
| Cow position: | chr16:39646617-39646308 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 1-331 |
| Cow position: | chr16:22841985-22842318 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 2-319 |
| Cow position: | chr16:48385332-48385653 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 3-229 |
| Cow position: | chr16:42345543-42345763 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 4-232 |
| Cow position: | chr16:7550036-7549803 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 4-258 |
| Cow position: | chr16:24855608-24855347 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 4-259 |
| Cow position: | chr16:6344373-6344633 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 136 |
| Conread position: | 4-282 |
| Cow position: | chr16:8322913-8323201 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 4-296 |
| Cow position: | chr16:42733942-42734224 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 4-301 |
| Cow position: | chr16:13689735-13689429 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 4-302 |
| Cow position: | chr16:51112811-51113112 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 4-303 |
| Cow position: | chr16:42340265-42339969 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 4-317 |
| Cow position: | chr16:4399804-4399471 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 4-317 |
| Cow position: | chr16:18141258-18141579 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 4-318 |
| Cow position: | chr16:40562301-40561975 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 4-319 |
| Cow position: | chr16:3614809-3614496 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 155, 39 |
| Conread position: | 4-319 |
| Cow position: | chr16:9933227-9932904 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-319 |
| Cow position: | chr16:11774979-11775303 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 4-319 |
| Cow position: | chr16:13195271-13195585 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 4-319 |
| Cow position: | chr16:16402258-16402579 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-319 |
| Cow position: | chr16:18353889-18354203 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 4-319 |
| Cow position: | chr16:20025510-20025192 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-319 |
| Cow position: | chr16:37452545-37452868 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 4-319 |
| Cow position: | chr16:45731318-45731624 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 4-322 |
| Cow position: | chr16:53891717-53892036 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 4-331 |
| Cow position: | chr16:47518914-47518588 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 4-336 |
| Cow position: | chr16:54579235-54578897 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 5-292 |
| Cow position: | chr16:12360905-12361197 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 5-318 |
| Cow position: | chr16:33704873-33704547 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 5-364 |
| Cow position: | chr16:11008413-11008038 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 6-207 |
| Cow position: | chr16:19047367-19047575 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-229 |
| Cow position: | chr16:31348699-31348929 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 6-232 |
| Cow position: | chr16:50521544-50521313 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 6-300 |
| Cow position: | chr16:54664734-54665036 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 6-311 |
| Cow position: | chr16:4981310-4981613 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 6-312 |
| Cow position: | chr16:49125466-49125765 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 6-317 |
| Cow position: | chr16:13969303-13969629 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 6-317 |
| Cow position: | chr16:37117141-37116824 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 6-317 |
| Cow position: | chr16:56522407-56522722 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 6-319 |
| Cow position: | chr16:18206026-18205719 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 6-319 |
| Cow position: | chr16:25965566-25965254 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 6-319 |
| Cow position: | chr16:49169314-49169634 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 6-331 |
| Cow position: | chr16:13306805-13307128 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 6-346 |
| Cow position: | chr16:53627361-53627697 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 7-319 |
| Cow position: | chr16:15370752-15370428 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 8-231 |
| Cow position: | chr16:38243598-38243826 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 8-316 |
| Cow position: | chr16:20476596-20476287 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 8-319 |
| Cow position: | chr16:38663646-38663963 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 11-292 |
| Cow position: | chr16:43308499-43308794 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 11-319 |
| Cow position: | chr16:3246143-3246444 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 132 |
| Conread position: | 13-319 |
| Cow position: | chr16:29380309-29380002 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 14-258 |
| Cow position: | chr16:7977041-7976796 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 14-280 |
| Cow position: | chr16:39238005-39237729 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 16-317 |
| Cow position: | chr16:3633349-3633042 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 18-359 |
| Cow position: | chr16:11619804-11619460 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 31-304 |
| Cow position: | chr16:4145103-4144827 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 109, 28 |
| Conread position: | 39-299 |
| Cow position: | chr16:13973254-13973514 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 40-329 |
| Cow position: | chr16:22868146-22868436 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 43-302 |
| Cow position: | chr16:4372465-4372731 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 43-326 |
| Cow position: | chr16:56912685-56912980 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 44-319 |
| Cow position: | chr16:16096767-16096487 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 15, 234 |
| Conread position: | 48-303 |
| Cow position: | chr16:13791540-13791277 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 48-318 |
| Cow position: | chr16:15189209-15188947 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 49-317 |
| Cow position: | chr16:499118-498866 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 58-319 |
| Cow position: | chr16:51288995-51289250 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 59-319 |
| Cow position: | chr16:43804503-43804245 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 62-318 |
| Cow position: | chr16:14028622-14028872 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 70-277 |
| Cow position: | chr16:9615236-9615445 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 78-295 |
| Cow position: | chr16:51530976-51531201 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 88-331 |
| Cow position: | chr16:53613286-53613030 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 89-241 |
| Cow position: | chr16:27723194-27723041 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 89-307 |
| Cow position: | chr16:23810894-23810682 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 97-319 |
| Cow position: | chr16:30209729-30209511 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 98-319 |
| Cow position: | chr16:51399772-51399998 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 99-319 |
| Cow position: | chr16:26501128-26500909 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 103-341 |
| Cow position: | chr16:33752164-33751924 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 106-321 |
| Cow position: | chr16:37062428-37062651 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 54, 81 |
Show alignments to all cow chromosomes.