Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-303 |
| Cow position: | chr17:9911871-9911568 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 1-313 |
| Cow position: | chr17:1035483-1035809 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 1-313 |
| Cow position: | chr17:18860609-18860925 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 1-317 |
| Cow position: | chr17:20992930-20993248 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 1-369 |
| Cow position: | chr17:9746626-9746255 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 3-319 |
| Cow position: | chr17:13922593-13922262 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 4-206 |
| Cow position: | chr17:27202937-27203139 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-215 |
| Cow position: | chr17:11215123-11215333 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 4-296 |
| Cow position: | chr17:25612199-25611905 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 28, 123 |
| Conread position: | 4-303 |
| Cow position: | chr17:33275641-33275941 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 4-307 |
| Cow position: | chr17:24077510-24077205 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 96, 63 |
| Conread position: | 4-318 |
| Cow position: | chr17:21292935-21293255 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 4-319 |
| Cow position: | chr17:9565410-9565098 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 164, 29 |
| Conread position: | 4-319 |
| Cow position: | chr17:25097564-25097252 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 4-319 |
| Cow position: | chr17:27048264-27047952 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 4-331 |
| Cow position: | chr17:32651724-32651392 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 4-363 |
| Cow position: | chr17:17410402-17410041 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 5-235 |
| Cow position: | chr17:7654344-7654579 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 5-239 |
| Cow position: | chr17:32349175-32348943 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 5-319 |
| Cow position: | chr17:24883463-24883775 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 6-222 |
| Cow position: | chr17:23798388-23798168 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 6-227 |
| Cow position: | chr17:25502217-25501995 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 6-230 |
| Cow position: | chr17:14060667-14060898 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 6-302 |
| Cow position: | chr17:11277921-11278226 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-303 |
| Cow position: | chr17:26000224-25999921 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 6-303 |
| Cow position: | chr17:37481962-37482274 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 6-319 |
| Cow position: | chr17:32027345-32027673 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 6-319 |
| Cow position: | chr17:38615067-38614745 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 7-215 |
| Cow position: | chr17:7137085-7136878 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 7-317 |
| Cow position: | chr17:18720341-18720657 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 21-319 |
| Cow position: | chr17:14848450-14848734 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 32-342 |
| Cow position: | chr17:12059014-12059322 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 39-226 |
| Cow position: | chr17:17266819-17267009 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 39-302 |
| Cow position: | chr17:44232640-44232914 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 39-319 |
| Cow position: | chr17:11296721-11296424 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 39-319 |
| Cow position: | chr17:41289950-41290228 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 43-319 |
| Cow position: | chr17:1783536-1783817 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 45-319 |
| Cow position: | chr17:20780575-20780301 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 49-331 |
| Cow position: | chr17:21312751-21313029 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 57-312 |
| Cow position: | chr17:42347170-42347425 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 58-319 |
| Cow position: | chr17:11056318-11056586 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 58-319 |
| Cow position: | chr17:13143637-13143901 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 58-349 |
| Cow position: | chr17:5246945-5246650 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 59-275 |
| Cow position: | chr17:10458886-10459106 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 71-319 |
| Cow position: | chr17:5895872-5896121 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 71-319 |
| Cow position: | chr17:33271643-33271890 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 77-303 |
| Cow position: | chr17:25141484-25141265 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 13 |
| Conread position: | 77-313 |
| Cow position: | chr17:15067593-15067828 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 90-319 |
| Cow position: | chr17:20234250-20234016 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 91-331 |
| Cow position: | chr17:5745232-5745467 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 91-352 |
| Cow position: | chr17:34948659-34948391 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 93-317 |
| Cow position: | chr17:30539236-30539458 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 94-319 |
| Cow position: | chr17:9854004-9853775 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 118, 46 |
| Conread position: | 97-303 |
| Cow position: | chr17:35311441-35311226 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 99-305 |
| Cow position: | chr17:15133161-15132967 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 102-319 |
| Cow position: | chr17:21680774-21680557 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 106-265 |
| Cow position: | chr17:38613252-38613087 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 106-302 |
| Cow position: | chr17:18929094-18929269 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 31 |
Show alignments to all cow chromosomes.