Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-319 |
| Cow position: | chr18:51757133-51756814 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 71 |
| Conread position: | 4-215 |
| Cow position: | chr18:43555489-43555702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-224 |
| Cow position: | chr18:30586190-30586406 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-229 |
| Cow position: | chr18:18369326-18369557 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 4-267 |
| Cow position: | chr18:48828742-48829021 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 4-269 |
| Cow position: | chr18:10977176-10977447 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 4-283 |
| Cow position: | chr18:25984536-25984822 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 4-302 |
| Cow position: | chr18:13507705-13507999 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 4-302 |
| Cow position: | chr18:37382058-37382365 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 4-313 |
| Cow position: | chr18:21102741-21103037 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 4-317 |
| Cow position: | chr18:22214523-22214204 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 4-319 |
| Cow position: | chr18:3158560-3158885 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 16, 141 |
| Conread position: | 4-319 |
| Cow position: | chr18:4182152-4182474 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 4-319 |
| Cow position: | chr18:6609822-6610142 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 4-319 |
| Cow position: | chr18:13360089-13359778 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 4-331 |
| Cow position: | chr18:33157852-33157524 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 4-331 |
| Cow position: | chr18:46048787-46048464 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 5-256 |
| Cow position: | chr18:2863956-2864222 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 5-318 |
| Cow position: | chr18:2592134-2592456 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 6-260 |
| Cow position: | chr18:51392610-51392873 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 6-303 |
| Cow position: | chr18:4758000-4758293 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 6-313 |
| Cow position: | chr18:39001774-39002073 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 6-314 |
| Cow position: | chr18:4381327-4381015 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 137 |
| Conread position: | 6-316 |
| Cow position: | chr18:23447028-23447363 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 290 |
| Conread position: | 6-318 |
| Cow position: | chr18:17005293-17004967 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 6-319 |
| Cow position: | chr18:7965265-7964947 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 122 |
| Conread position: | 6-319 |
| Cow position: | chr18:14815315-14815619 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 6-319 |
| Cow position: | chr18:31724856-31725168 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 6-319 |
| Cow position: | chr18:50382281-50381973 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 6-319 |
| Cow position: | chr18:51405873-51406187 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 6-319 |
| Cow position: | chr18:52635037-52635365 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 6-338 |
| Cow position: | chr18:7956181-7955847 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 6-373 |
| Cow position: | chr18:1144151-1144523 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 7-199 |
| Cow position: | chr18:35874110-35873913 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 7-228 |
| Cow position: | chr18:7109162-7108932 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 8-209 |
| Cow position: | chr18:51643334-51643541 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 9-299 |
| Cow position: | chr18:43283726-43284022 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 13-245 |
| Cow position: | chr18:47812496-47812257 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 20-319 |
| Cow position: | chr18:267800-268095 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 30-306 |
| Cow position: | chr18:20481875-20482146 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 31-338 |
| Cow position: | chr18:7487256-7486946 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 32-318 |
| Cow position: | chr18:47314276-47314577 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 39-319 |
| Cow position: | chr18:16417708-16417980 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 39-319 |
| Cow position: | chr18:32121069-32121344 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 40-340 |
| Cow position: | chr18:4796969-4796668 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 43-283 |
| Cow position: | chr18:21205358-21205118 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 43-306 |
| Cow position: | chr18:48453682-48453422 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 47-319 |
| Cow position: | chr18:52632417-52632689 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 48-318 |
| Cow position: | chr18:42966853-42966555 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 48-340 |
| Cow position: | chr18:33606620-33606327 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 58-256 |
| Cow position: | chr18:14085441-14085238 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 58-302 |
| Cow position: | chr18:1582293-1582542 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 58-319 |
| Cow position: | chr18:34621383-34621648 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 59-295 |
| Cow position: | chr18:219316-219068 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 61-319 |
| Cow position: | chr18:35076367-35076103 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 38, 79 |
| Conread position: | 62-313 |
| Cow position: | chr18:48290466-48290716 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 65-303 |
| Cow position: | chr18:33793674-33793440 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 109, 35 |
| Conread position: | 65-319 |
| Cow position: | chr18:21195371-21195623 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 69-319 |
| Cow position: | chr18:52382670-52382414 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 77-319 |
| Cow position: | chr18:16847653-16847414 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 92-316 |
| Cow position: | chr18:46436818-46437034 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 94-319 |
| Cow position: | chr18:26937667-26937448 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 94-319 |
| Cow position: | chr18:36098147-36097917 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 96-319 |
| Cow position: | chr18:36445380-36445148 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 102-319 |
| Cow position: | chr18:23807937-23808157 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 106-306 |
| Cow position: | chr18:21768563-21768356 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 130-303 |
| Cow position: | chr18:4529421-4529253 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 104 |
Show alignments to all cow chromosomes.