Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 4-238 |
| Cow position: | chr21:47363602-47363844 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 4-277 |
| Cow position: | chr21:957804-957520 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 4-281 |
| Cow position: | chr21:20153088-20152794 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-286 |
| Cow position: | chr21:10633508-10633796 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 4-292 |
| Cow position: | chr21:15611272-15610990 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 4-292 |
| Cow position: | chr21:39401722-39401433 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 4-302 |
| Cow position: | chr21:8235430-8235716 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 4-306 |
| Cow position: | chr21:32339608-32339912 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 4-313 |
| Cow position: | chr21:5392403-5392724 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 4-313 |
| Cow position: | chr21:42384640-42384323 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-317 |
| Cow position: | chr21:38449317-38449638 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-318 |
| Cow position: | chr21:33997095-33997409 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 4-319 |
| Cow position: | chr21:724753-725080 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 4-319 |
| Cow position: | chr21:4399935-4399611 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 4-319 |
| Cow position: | chr21:6713391-6713726 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 4-319 |
| Cow position: | chr21:10151937-10151607 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 282 |
| Conread position: | 4-319 |
| Cow position: | chr21:13738685-13738383 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 4-319 |
| Cow position: | chr21:14760697-14760392 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 4-319 |
| Cow position: | chr21:34390843-34391158 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-319 |
| Cow position: | chr21:36795735-36795414 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-319 |
| Cow position: | chr21:42841465-42841779 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-322 |
| Cow position: | chr21:45915586-45915895 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 4-331 |
| Cow position: | chr21:30606954-30607288 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 4-369 |
| Cow position: | chr21:13584929-13585295 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 5-319 |
| Cow position: | chr21:31662598-31662272 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 118 |
| Conread position: | 6-251 |
| Cow position: | chr21:46551973-46552222 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 6-256 |
| Cow position: | chr21:47170-46911 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 6-289 |
| Cow position: | chr21:13840456-13840164 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 6-299 |
| Cow position: | chr21:10001205-10000912 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 6-316 |
| Cow position: | chr21:30231564-30231888 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 6-319 |
| Cow position: | chr21:9416381-9416054 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 6-319 |
| Cow position: | chr21:23587012-23586688 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-319 |
| Cow position: | chr21:27863383-27863707 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 6-319 |
| Cow position: | chr21:41597941-41597627 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 6-325 |
| Cow position: | chr21:10004756-10005083 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 7-228 |
| Cow position: | chr21:36789924-36789700 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 7-337 |
| Cow position: | chr21:22856347-22856010 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 8-274 |
| Cow position: | chr21:29978632-29978907 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 8-302 |
| Cow position: | chr21:15976761-15976470 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 8-303 |
| Cow position: | chr21:26647886-26648178 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 13-319 |
| Cow position: | chr21:41621248-41620931 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 41-312 |
| Cow position: | chr21:39450066-39450349 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 44-337 |
| Cow position: | chr21:44109093-44108800 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 45-319 |
| Cow position: | chr21:5454904-5455170 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 50 |
| Conread position: | 48-319 |
| Cow position: | chr21:12960815-12961087 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 48-336 |
| Cow position: | chr21:8985636-8985341 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 58-292 |
| Cow position: | chr21:28617665-28617429 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 58-319 |
| Cow position: | chr21:27743823-27743554 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 59-306 |
| Cow position: | chr21:28989683-28989440 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 59-319 |
| Cow position: | chr21:28882210-28881954 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 93, 76 |
| Conread position: | 62-266 |
| Cow position: | chr21:39809964-39809762 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 62-318 |
| Cow position: | chr21:911896-912154 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 63-319 |
| Cow position: | chr21:32536046-32535788 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 87, 74 |
| Conread position: | 63-319 |
| Cow position: | chr21:42913674-42913934 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 77-319 |
| Cow position: | chr21:20925448-20925694 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 84-319 |
| Cow position: | chr21:15445023-15445267 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 84-319 |
| Cow position: | chr21:42905327-42905566 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 91-311 |
| Cow position: | chr21:46973090-46973307 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 92-319 |
| Cow position: | chr21:33791324-33791556 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 60, 48 |
Show alignments to all cow chromosomes.