Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-317 |
| Cow position: | chr29:22175752-22175442 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 1-319 |
| Cow position: | chr29:31929058-31928726 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 193 |
| Conread position: | 2-309 |
| Cow position: | chr29:25474991-25474664 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 2-319 |
| Cow position: | chr29:22936338-22936028 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 4-268 |
| Cow position: | chr29:38581045-38580771 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 4-279 |
| Cow position: | chr29:44008719-44008992 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 4-294 |
| Cow position: | chr29:19428729-19428435 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 99 |
| Conread position: | 4-303 |
| Cow position: | chr29:22778110-22778422 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 4-312 |
| Cow position: | chr29:10235068-10235361 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 4-313 |
| Cow position: | chr29:36183347-36183029 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-318 |
| Cow position: | chr29:17668553-17668244 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 213, 91 |
| Conread position: | 4-319 |
| Cow position: | chr29:1022362-1022025 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 4-319 |
| Cow position: | chr29:28195455-28195772 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 131, 29 |
| Conread position: | 4-319 |
| Cow position: | chr29:32799646-32799956 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 4-319 |
| Cow position: | chr29:39567748-39567435 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 5-263 |
| Cow position: | chr29:9718707-9718972 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 157, 28 |
| Conread position: | 5-319 |
| Cow position: | chr29:2984955-2984634 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 6-227 |
| Cow position: | chr29:24046060-24045832 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-230 |
| Cow position: | chr29:17297200-17296971 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 6-246 |
| Cow position: | chr29:37618370-37618123 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 6-276 |
| Cow position: | chr29:6337728-6337449 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 6-289 |
| Cow position: | chr29:40097026-40096733 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 6-295 |
| Cow position: | chr29:1229671-1229379 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 6-316 |
| Cow position: | chr29:41530914-41530600 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 6-319 |
| Cow position: | chr29:1306796-1307117 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 6-319 |
| Cow position: | chr29:16195904-16195599 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 6-319 |
| Cow position: | chr29:25333397-25333706 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 53, 105 |
| Conread position: | 6-348 |
| Cow position: | chr29:25088807-25088465 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 7-303 |
| Cow position: | chr29:4520399-4520098 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 12-301 |
| Cow position: | chr29:6286103-6286393 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 31-317 |
| Cow position: | chr29:37785135-37785430 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 38-308 |
| Cow position: | chr29:11915857-11915574 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 39-313 |
| Cow position: | chr29:12004733-12005011 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 39-319 |
| Cow position: | chr29:28868668-28868378 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 40-296 |
| Cow position: | chr29:39643204-39642946 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 48-215 |
| Cow position: | chr29:12025447-12025617 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 62-256 |
| Cow position: | chr29:30188333-30188533 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 79-319 |
| Cow position: | chr29:32963544-32963301 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 80-319 |
| Cow position: | chr29:9686013-9686254 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 97-359 |
| Cow position: | chr29:6217576-6217845 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 98-294 |
| Cow position: | chr29:19821258-19821068 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 106-318 |
| Cow position: | chr29:7407925-7408141 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 34 |
Show alignments to all cow chromosomes.