Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-319 |
| Cow position: | chr3:39171437-39171759 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 7, 60 |
| Conread position: | 3-192 |
| Cow position: | chr3:43727124-43726931 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 134 |
| Conread position: | 3-211 |
| Cow position: | chr3:59884024-59884237 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 4-229 |
| Cow position: | chr3:74079593-74079824 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 4-256 |
| Cow position: | chr3:74878545-74878804 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 4-258 |
| Cow position: | chr3:4319755-4319494 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-275 |
| Cow position: | chr3:13507512-13507229 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 4-301 |
| Cow position: | chr3:48296742-48296452 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 4-308 |
| Cow position: | chr3:60597585-60597284 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-316 |
| Cow position: | chr3:70899935-70899628 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 4-318 |
| Cow position: | chr3:12711871-12712197 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-318 |
| Cow position: | chr3:17934894-17935197 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-318 |
| Cow position: | chr3:66609800-66610112 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 4-318 |
| Cow position: | chr3:70334651-70334977 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 4-319 |
| Cow position: | chr3:10958196-10958503 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 4-319 |
| Cow position: | chr3:26904154-26903840 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 4-319 |
| Cow position: | chr3:38691362-38691680 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 4-319 |
| Cow position: | chr3:53739141-53739466 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 4-319 |
| Cow position: | chr3:55085125-55085459 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 28, 286 |
| Conread position: | 4-319 |
| Cow position: | chr3:64280886-64281211 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 4-319 |
| Cow position: | chr3:65058742-65058427 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 4-319 |
| Cow position: | chr3:72676135-72675812 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 4-319 |
| Cow position: | chr3:77365246-77365569 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 28, 144 |
| Conread position: | 4-322 |
| Cow position: | chr3:73764156-73764471 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 4-331 |
| Cow position: | chr3:20437612-20437933 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 5-319 |
| Cow position: | chr3:54435019-54434699 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 151 |
| Conread position: | 5-331 |
| Cow position: | chr3:5097250-5096915 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 6-250 |
| Cow position: | chr3:57760540-57760290 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 6-254 |
| Cow position: | chr3:55318855-55319110 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 6-316 |
| Cow position: | chr3:1830534-1830835 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 6-319 |
| Cow position: | chr3:210361-210047 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 6-319 |
| Cow position: | chr3:44102010-44101706 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 6-319 |
| Cow position: | chr3:53046621-53046932 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 6-319 |
| Cow position: | chr3:53270872-53270551 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 6-319 |
| Cow position: | chr3:61539843-61539521 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 6-319 |
| Cow position: | chr3:68587064-68586763 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 6-319 |
| Cow position: | chr3:80053500-80053809 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 6-320 |
| Cow position: | chr3:48241656-48241345 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 6-327 |
| Cow position: | chr3:29596432-29596110 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 6-331 |
| Cow position: | chr3:23471417-23471754 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 142 |
| Conread position: | 21-319 |
| Cow position: | chr3:33698758-33698446 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 31-319 |
| Cow position: | chr3:55010150-55010430 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 39-319 |
| Cow position: | chr3:49218307-49218582 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 41-262 |
| Cow position: | chr3:15859661-15859891 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 43-319 |
| Cow position: | chr3:34270920-34270656 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 43-319 |
| Cow position: | chr3:75158364-75158090 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 44-230 |
| Cow position: | chr3:27212361-27212176 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 48-319 |
| Cow position: | chr3:27544339-27544604 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 104, 10 |
| Conread position: | 51-317 |
| Cow position: | chr3:17952652-17952383 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 54-256 |
| Cow position: | chr3:25060072-25059859 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 58-290 |
| Cow position: | chr3:59271529-59271305 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 58-319 |
| Cow position: | chr3:63860903-63861176 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 116, 94 |
| Conread position: | 59-319 |
| Cow position: | chr3:30701295-30701047 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 59-319 |
| Cow position: | chr3:57553863-57554122 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 61-296 |
| Cow position: | chr3:74409468-74409239 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 61-302 |
| Cow position: | chr3:4087176-4087424 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 62-319 |
| Cow position: | chr3:41366998-41367258 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 62-319 |
| Cow position: | chr3:43528254-43528512 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 65-233 |
| Cow position: | chr3:24872693-24872530 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 71-257 |
| Cow position: | chr3:49140066-49140251 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 71-319 |
| Cow position: | chr3:7858344-7858077 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 72-317 |
| Cow position: | chr3:29807438-29807189 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 78-319 |
| Cow position: | chr3:42588326-42588074 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 89-319 |
| Cow position: | chr3:80081865-80082092 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 95-347 |
| Cow position: | chr3:6853553-6853802 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 96-327 |
| Cow position: | chr3:47284786-47284555 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 97-361 |
| Cow position: | chr3:25691704-25691434 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 100-304 |
| Cow position: | chr3:44534813-44535025 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 106-337 |
| Cow position: | chr3:22872106-22872348 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 141-282 |
| Cow position: | chr3:4861596-4861451 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 44 |
Show alignments to all cow chromosomes.