Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 2-319 |
| Cow position: | chr4:18095611-18095935 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 4-218 |
| Cow position: | chr4:59377970-59377759 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 4-232 |
| Cow position: | chr4:20147244-20147013 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-258 |
| Cow position: | chr4:27344620-27344871 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-263 |
| Cow position: | chr4:16594143-16593878 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 4-271 |
| Cow position: | chr4:13941517-13941245 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 4-302 |
| Cow position: | chr4:65432211-65431903 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 4-304 |
| Cow position: | chr4:6653783-6653491 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-304 |
| Cow position: | chr4:32726285-32725978 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 4-308 |
| Cow position: | chr4:19322017-19322327 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 4-311 |
| Cow position: | chr4:21391751-21392055 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 4-313 |
| Cow position: | chr4:23646797-23647096 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 4-317 |
| Cow position: | chr4:25879451-25879139 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 150, 27 |
| Conread position: | 4-319 |
| Cow position: | chr4:508848-509157 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-319 |
| Cow position: | chr4:3850612-3850294 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 4-319 |
| Cow position: | chr4:4084389-4084705 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 4-319 |
| Cow position: | chr4:19314073-19313746 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 4-319 |
| Cow position: | chr4:22344961-22345274 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 4-319 |
| Cow position: | chr4:23854241-23853945 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 4-319 |
| Cow position: | chr4:27276483-27276800 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 4-319 |
| Cow position: | chr4:34641665-34641988 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 143 |
| Conread position: | 4-319 |
| Cow position: | chr4:37935224-37935540 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-319 |
| Cow position: | chr4:45738414-45738741 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 185 |
| Conread position: | 4-319 |
| Cow position: | chr4:52748396-52748717 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 4-322 |
| Cow position: | chr4:51784240-51783918 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 183 |
| Conread position: | 4-331 |
| Cow position: | chr4:3837335-3837008 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-335 |
| Cow position: | chr4:65650073-65650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 4-337 |
| Cow position: | chr4:20973-20646 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 4-373 |
| Cow position: | chr4:47348887-47348518 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 5-256 |
| Cow position: | chr4:38705714-38705960 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 5-273 |
| Cow position: | chr4:13973910-13974187 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 5-299 |
| Cow position: | chr4:10915776-10916080 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 5-300 |
| Cow position: | chr4:46591727-46591420 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 5-319 |
| Cow position: | chr4:42423745-42424060 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 94 |
| Conread position: | 5-319 |
| Cow position: | chr4:53126171-53125880 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 6-229 |
| Cow position: | chr4:34369391-34369622 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 6-233 |
| Cow position: | chr4:27632502-27632280 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 6-301 |
| Cow position: | chr4:28836595-28836285 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 6-311 |
| Cow position: | chr4:30974392-30974086 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 6-313 |
| Cow position: | chr4:10905406-10905712 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 6-319 |
| Cow position: | chr4:5999136-5999453 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 6-319 |
| Cow position: | chr4:14743310-14743000 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 6-319 |
| Cow position: | chr4:19265632-19265314 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 6-319 |
| Cow position: | chr4:34210092-34209767 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 6-319 |
| Cow position: | chr4:43865798-43866110 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 6-371 |
| Cow position: | chr4:25888773-25889143 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 7-308 |
| Cow position: | chr4:14414289-14414594 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 7-313 |
| Cow position: | chr4:45367797-45367483 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 7-318 |
| Cow position: | chr4:23444988-23445309 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 8-303 |
| Cow position: | chr4:34383285-34383580 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 8-317 |
| Cow position: | chr4:8801558-8801247 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 8-331 |
| Cow position: | chr4:51739660-51739975 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 147, 25 |
| Conread position: | 9-373 |
| Cow position: | chr4:20299330-20298950 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 30-329 |
| Cow position: | chr4:21516970-21517273 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 111 |
| Conread position: | 31-265 |
| Cow position: | chr4:1354593-1354821 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 143, 70 |
| Conread position: | 31-319 |
| Cow position: | chr4:11671484-11671193 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 39-301 |
| Cow position: | chr4:56570830-56570563 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 43-312 |
| Cow position: | chr4:49424846-49424586 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 43-319 |
| Cow position: | chr4:45662491-45662759 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 44-318 |
| Cow position: | chr4:36893376-36893095 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 46-319 |
| Cow position: | chr4:11901544-11901822 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 48-319 |
| Cow position: | chr4:22051458-22051728 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 49-299 |
| Cow position: | chr4:27687941-27687684 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 57-319 |
| Cow position: | chr4:22236474-22236734 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 80 |
| Conread position: | 58-268 |
| Cow position: | chr4:36725044-36724832 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 58-302 |
| Cow position: | chr4:48137915-48137667 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 58-319 |
| Cow position: | chr4:61214992-61215257 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 95, 77 |
| Conread position: | 59-319 |
| Cow position: | chr4:19584718-19584445 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 62-313 |
| Cow position: | chr4:49089790-49089541 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 62-337 |
| Cow position: | chr4:11099668-11099940 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 72-354 |
| Cow position: | chr4:52166862-52167140 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 89-313 |
| Cow position: | chr4:49993045-49992833 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 89-319 |
| Cow position: | chr4:43369878-43370109 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 94-254 |
| Cow position: | chr4:33869627-33869465 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 96-322 |
| Cow position: | chr4:54975264-54975046 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 98-282 |
| Cow position: | chr4:10999742-10999926 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 101-319 |
| Cow position: | chr4:43542774-43542993 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 102-313 |
| Cow position: | chr4:57555932-57555713 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 103-319 |
| Cow position: | chr4:43495862-43495643 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 50, 82 |
Show alignments to all cow chromosomes.