Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-206 |
| Cow position: | chr5:23678605-23678814 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 1-256 |
| Cow position: | chr5:66972526-66972257 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 3-230 |
| Cow position: | chr5:54060371-54060140 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 3-304 |
| Cow position: | chr5:18899070-18898772 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 3-350 |
| Cow position: | chr5:8024105-8024446 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 4-202 |
| Cow position: | chr5:41294174-41293974 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 4-208 |
| Cow position: | chr5:58446901-58446691 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 4-221 |
| Cow position: | chr5:49474451-49474670 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 4-290 |
| Cow position: | chr5:69731594-69731320 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 4-301 |
| Cow position: | chr5:458582-458273 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 4-303 |
| Cow position: | chr5:38833215-38832910 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 4-307 |
| Cow position: | chr5:62142770-62142456 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 278 |
| Conread position: | 4-318 |
| Cow position: | chr5:5110980-5111302 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 4-318 |
| Cow position: | chr5:29353031-29353354 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 4-319 |
| Cow position: | chr5:32696729-32697039 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 4-319 |
| Cow position: | chr5:52165084-52165408 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 4-319 |
| Cow position: | chr5:54311430-54311107 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-319 |
| Cow position: | chr5:56820170-56820486 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 4-319 |
| Cow position: | chr5:63987352-63987673 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 134 |
| Conread position: | 4-319 |
| Cow position: | chr5:65588793-65588486 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 4-319 |
| Cow position: | chr5:66366603-66366305 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 4-322 |
| Cow position: | chr5:16893677-16894005 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 4-322 |
| Cow position: | chr5:29903429-29903751 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 5-306 |
| Cow position: | chr5:26262586-26262887 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 6-223 |
| Cow position: | chr5:19335689-19335915 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 6-229 |
| Cow position: | chr5:73167919-73168134 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 6-270 |
| Cow position: | chr5:18289214-18288957 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 6-291 |
| Cow position: | chr5:14903976-14904271 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 276 |
| Conread position: | 6-300 |
| Cow position: | chr5:7044613-7044918 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 6-317 |
| Cow position: | chr5:42845501-42845824 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 6-318 |
| Cow position: | chr5:15479218-15478888 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 6-319 |
| Cow position: | chr5:18574264-18573944 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 6-319 |
| Cow position: | chr5:20128144-20127828 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 6-319 |
| Cow position: | chr5:42064297-42063977 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 6-319 |
| Cow position: | chr5:45225725-45226050 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 6-331 |
| Cow position: | chr5:42744873-42744554 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 168, 34 |
| Conread position: | 7-313 |
| Cow position: | chr5:3771937-3771626 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 8-319 |
| Cow position: | chr5:30845200-30844886 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 8-319 |
| Cow position: | chr5:67244007-67243698 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 11-319 |
| Cow position: | chr5:26094079-26094395 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 21-318 |
| Cow position: | chr5:63964092-63964398 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 25-223 |
| Cow position: | chr5:56680324-56680119 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 31-292 |
| Cow position: | chr5:21964351-21964086 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 37-314 |
| Cow position: | chr5:7140048-7140326 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 6, 117 |
| Conread position: | 39-319 |
| Cow position: | chr5:54404833-54405121 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 41-308 |
| Cow position: | chr5:41545838-41546109 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 48-319 |
| Cow position: | chr5:53855748-53855478 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 48-319 |
| Cow position: | chr5:62826706-62826979 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 109 |
| Conread position: | 58-279 |
| Cow position: | chr5:17644618-17644842 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 62-304 |
| Cow position: | chr5:32956062-32956303 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 62-317 |
| Cow position: | chr5:44994008-44994261 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 62-319 |
| Cow position: | chr5:30638831-30639076 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 71-301 |
| Cow position: | chr5:58320445-58320670 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 71-319 |
| Cow position: | chr5:65924666-65924925 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 77-303 |
| Cow position: | chr5:40039751-40039981 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 78-313 |
| Cow position: | chr5:42677249-42677014 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 57 |
| Conread position: | 78-347 |
| Cow position: | chr5:18090740-18090472 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 79-308 |
| Cow position: | chr5:6575574-6575802 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 81-319 |
| Cow position: | chr5:29505126-29504886 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 90-319 |
| Cow position: | chr5:50950560-50950327 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 97-308 |
| Cow position: | chr5:49361992-49362206 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 102-302 |
| Cow position: | chr5:45037015-45036812 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 102-317 |
| Cow position: | chr5:65932934-65933152 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 35 |
Show alignments to all cow chromosomes.