Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-274 |
| Cow position: | chr6:15447087-15447378 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 159 |
| Conread position: | 1-280 |
| Cow position: | chr6:11246880-11246591 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 8, 144 |
| Conread position: | 2-319 |
| Cow position: | chr6:35103218-35103539 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 3-304 |
| Cow position: | chr6:528175-528475 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 3-319 |
| Cow position: | chr6:12338102-12337773 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 29, 282 |
| Conread position: | 4-249 |
| Cow position: | chr6:582165-582411 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 94 |
| Conread position: | 4-261 |
| Cow position: | chr6:60740122-60739859 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-270 |
| Cow position: | chr6:19446358-19446095 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 4-295 |
| Cow position: | chr6:47799401-47799110 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 4-300 |
| Cow position: | chr6:4864439-4864733 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 4-313 |
| Cow position: | chr6:38641600-38641292 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 4-319 |
| Cow position: | chr6:5609339-5609652 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 4-319 |
| Cow position: | chr6:7190011-7190331 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 79 |
| Conread position: | 4-319 |
| Cow position: | chr6:32122015-32121699 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 4-319 |
| Cow position: | chr6:38441280-38440970 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 4-319 |
| Cow position: | chr6:45064909-45065218 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 4-319 |
| Cow position: | chr6:65903516-65903828 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 4-319 |
| Cow position: | chr6:67951057-67950747 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 49 |
| Conread position: | 4-331 |
| Cow position: | chr6:15300725-15301042 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-343 |
| Cow position: | chr6:35990126-35990454 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 4-364 |
| Cow position: | chr6:38614920-38614569 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 5-329 |
| Cow position: | chr6:66874458-66874139 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 5-331 |
| Cow position: | chr6:54490628-54490965 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 6-214 |
| Cow position: | chr6:7119513-7119714 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 6-257 |
| Cow position: | chr6:4691869-4692136 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 133 |
| Conread position: | 6-268 |
| Cow position: | chr6:60783976-60783707 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 6-282 |
| Cow position: | chr6:8125432-8125157 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 6-302 |
| Cow position: | chr6:12091887-12092179 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 6-308 |
| Cow position: | chr6:46558163-46557855 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 6-312 |
| Cow position: | chr6:130057-130369 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 6-313 |
| Cow position: | chr6:54864555-54864872 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 6-317 |
| Cow position: | chr6:28148362-28148040 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 6-319 |
| Cow position: | chr6:1770092-1770407 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 6-319 |
| Cow position: | chr6:10176196-10176513 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 6-319 |
| Cow position: | chr6:42565794-42565474 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 6-319 |
| Cow position: | chr6:50747103-50746769 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 7-302 |
| Cow position: | chr6:19695912-19695611 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 7-312 |
| Cow position: | chr6:20157438-20157120 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 8-267 |
| Cow position: | chr6:12542826-12543095 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 8-319 |
| Cow position: | chr6:35436098-35435791 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 38, 136 |
| Conread position: | 8-319 |
| Cow position: | chr6:54365224-54365535 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 11-319 |
| Cow position: | chr6:48170039-48169733 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 21-319 |
| Cow position: | chr6:8804440-8804739 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 43-319 |
| Cow position: | chr6:49685649-49685373 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 109, 16 |
| Conread position: | 46-319 |
| Cow position: | chr6:16411255-16410984 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 48-230 |
| Cow position: | chr6:38234019-38233837 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 114, 47 |
| Conread position: | 48-268 |
| Cow position: | chr6:44984390-44984163 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 48-302 |
| Cow position: | chr6:34076089-34075824 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 87, 105 |
| Conread position: | 48-304 |
| Cow position: | chr6:28148895-28148646 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 48-319 |
| Cow position: | chr6:11169762-11169496 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 49-305 |
| Cow position: | chr6:18968720-18968970 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 49-307 |
| Cow position: | chr6:41733687-41733427 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 58-283 |
| Cow position: | chr6:49604726-49604507 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 58-303 |
| Cow position: | chr6:37199477-37199741 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 58-319 |
| Cow position: | chr6:607311-607050 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 58-319 |
| Cow position: | chr6:5957978-5958228 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 58-319 |
| Cow position: | chr6:67304855-67304590 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 114, 81 |
| Conread position: | 58-331 |
| Cow position: | chr6:52025600-52025878 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 77, 101 |
| Conread position: | 59-322 |
| Cow position: | chr6:2423794-2423534 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 62-319 |
| Cow position: | chr6:48344379-48344116 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 73-319 |
| Cow position: | chr6:5462023-5462260 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 64 |
| Conread position: | 91-319 |
| Cow position: | chr6:14839007-14839238 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 95-267 |
| Cow position: | chr6:16764640-16764804 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 96-319 |
| Cow position: | chr6:30786141-30786360 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 98-319 |
| Cow position: | chr6:20230816-20231037 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 106-369 |
| Cow position: | chr6:2582875-2582614 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 33 |
Show alignments to all cow chromosomes.