Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-319 |
| Cow position: | chr9:24997561-24997235 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 1-319 |
| Cow position: | chr9:44709785-44710102 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 4-184 |
| Cow position: | chr9:10819867-10819689 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 4-210 |
| Cow position: | chr9:51720936-51720733 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 4-229 |
| Cow position: | chr9:19493505-19493272 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 4-269 |
| Cow position: | chr9:11313549-11313274 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 4-279 |
| Cow position: | chr9:11319673-11319388 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 4-303 |
| Cow position: | chr9:1520779-1520466 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 4-313 |
| Cow position: | chr9:5594464-5594775 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-313 |
| Cow position: | chr9:8534729-8534407 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 4-318 |
| Cow position: | chr9:55287928-55287611 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 4-319 |
| Cow position: | chr9:6934112-6933791 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 4-319 |
| Cow position: | chr9:9552051-9552368 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-319 |
| Cow position: | chr9:41679708-41680015 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 4-319 |
| Cow position: | chr9:43870936-43871253 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-321 |
| Cow position: | chr9:28354478-28354816 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 4-322 |
| Cow position: | chr9:9461696-9461371 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 4-339 |
| Cow position: | chr9:8723755-8724103 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 5-319 |
| Cow position: | chr9:26086020-26086348 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 5-319 |
| Cow position: | chr9:62656765-62657073 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 6-239 |
| Cow position: | chr9:55321600-55321834 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 137 |
| Conread position: | 6-249 |
| Cow position: | chr9:11123520-11123279 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 6-298 |
| Cow position: | chr9:4646362-4646068 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 6-306 |
| Cow position: | chr9:32676640-32676954 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 6-317 |
| Cow position: | chr9:7409726-7410061 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 6-317 |
| Cow position: | chr9:15805960-15805642 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 6-317 |
| Cow position: | chr9:29185174-29184855 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 6-317 |
| Cow position: | chr9:52407127-52407449 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 6-319 |
| Cow position: | chr9:8998312-8998636 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 6-319 |
| Cow position: | chr9:15215724-15215400 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 6-319 |
| Cow position: | chr9:22696186-22696497 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 6-337 |
| Cow position: | chr9:35375389-35375723 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 8-223 |
| Cow position: | chr9:9815378-9815598 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 8-259 |
| Cow position: | chr9:1972913-1973165 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 166, 25 |
| Conread position: | 8-321 |
| Cow position: | chr9:51566530-51566205 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 11-279 |
| Cow position: | chr9:56011467-56011738 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 11-298 |
| Cow position: | chr9:39577706-39577994 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 21-311 |
| Cow position: | chr9:3387667-3387964 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 23-320 |
| Cow position: | chr9:1952290-1951988 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 26-319 |
| Cow position: | chr9:5531931-5532233 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 31-303 |
| Cow position: | chr9:6225465-6225187 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 33-319 |
| Cow position: | chr9:9516774-9516490 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 34-317 |
| Cow position: | chr9:10092400-10092115 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 39-319 |
| Cow position: | chr9:31226464-31226181 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 42-319 |
| Cow position: | chr9:54998028-54997742 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 43-317 |
| Cow position: | chr9:54528514-54528794 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 44-355 |
| Cow position: | chr9:58134015-58133709 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 46-353 |
| Cow position: | chr9:29035031-29034726 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 48-215 |
| Cow position: | chr9:31638634-31638467 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 47 |
| Conread position: | 58-318 |
| Cow position: | chr9:18002935-18002669 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 58-319 |
| Cow position: | chr9:34000601-34000332 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 110, 35 |
| Conread position: | 58-319 |
| Cow position: | chr9:50977226-50976965 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 58-329 |
| Cow position: | chr9:26435035-26434776 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 65-319 |
| Cow position: | chr9:1997163-1997413 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 71-312 |
| Cow position: | chr9:32732659-32732411 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 71-319 |
| Cow position: | chr9:35306086-35305839 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 74-319 |
| Cow position: | chr9:42497856-42498110 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 206 |
| Conread position: | 79-313 |
| Cow position: | chr9:42998431-42998196 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 90-303 |
| Cow position: | chr9:5319682-5319894 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 94-319 |
| Cow position: | chr9:36623391-36623171 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 95-306 |
| Cow position: | chr9:41995763-41995982 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 42 |
Show alignments to all cow chromosomes.