Cow genome map
| Conread name: | rpgl11_m7.y1 |
| Conread position: | 1-317 |
| Cow position: | chrX:1615943-1616271 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 1-319 |
| Cow position: | chrX:5872417-5872088 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 1-319 |
| Cow position: | chrX:31948835-31949156 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 142 |
| Conread position: | 4-255 |
| Cow position: | chrX:41068820-41068564 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 28, 141 |
| Conread position: | 4-270 |
| Cow position: | chrX:169451-169704 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 4-282 |
| Cow position: | chrX:42235429-42235722 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 4-283 |
| Cow position: | chrX:31312124-31311836 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 4-295 |
| Cow position: | chrX:1499760-1499468 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 95 |
| Conread position: | 4-301 |
| Cow position: | chrX:7695844-7695552 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 4-303 |
| Cow position: | chrX:29601733-29602040 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 4-304 |
| Cow position: | chrX:27680493-27680191 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 4-305 |
| Cow position: | chrX:43730129-43730426 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 4-312 |
| Cow position: | chrX:11633777-11633460 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 4-313 |
| Cow position: | chrX:10411891-10412205 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 4-316 |
| Cow position: | chrX:11717688-11718002 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 4-319 |
| Cow position: | chrX:878285-878596 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 4-319 |
| Cow position: | chrX:17662503-17662822 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 4-319 |
| Cow position: | chrX:28134433-28134121 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 4-319 |
| Cow position: | chrX:34441359-34441675 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 4-319 |
| Cow position: | chrX:34503015-34502695 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 4-319 |
| Cow position: | chrX:34565379-34565072 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 4-319 |
| Cow position: | chrX:37119688-37119374 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 4-322 |
| Cow position: | chrX:11082527-11082841 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 4-322 |
| Cow position: | chrX:15007054-15007379 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 4-329 |
| Cow position: | chrX:7722083-7721749 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 4-331 |
| Cow position: | chrX:1514324-1514638 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 4-332 |
| Cow position: | chrX:4043772-4044087 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 4-340 |
| Cow position: | chrX:11073096-11073433 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 5-319 |
| Cow position: | chrX:19690309-19689993 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 5-319 |
| Cow position: | chrX:43568013-43567714 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 6-229 |
| Cow position: | chrX:41027252-41027022 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 6-249 |
| Cow position: | chrX:27228219-27227966 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 6-264 |
| Cow position: | chrX:6407636-6407376 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 6-300 |
| Cow position: | chrX:46587915-46587611 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 135 |
| Conread position: | 6-319 |
| Cow position: | chrX:31250481-31250167 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 6-319 |
| Cow position: | chrX:36976044-36975724 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 26, 134 |
| Conread position: | 6-319 |
| Cow position: | chrX:38964201-38963884 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 6-319 |
| Cow position: | chrX:42247089-42247409 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 6-319 |
| Cow position: | chrX:44192351-44192668 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 6-331 |
| Cow position: | chrX:21004777-21004446 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 6-331 |
| Cow position: | chrX:38935372-38935043 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 6-337 |
| Cow position: | chrX:44873468-44873796 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 7-304 |
| Cow position: | chrX:29121139-29120846 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 8-313 |
| Cow position: | chrX:6278407-6278725 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 8-329 |
| Cow position: | chrX:39558257-39558584 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 149 |
| Conread position: | 8-331 |
| Cow position: | chrX:44961842-44961509 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 9-319 |
| Cow position: | chrX:7351388-7351074 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 13-320 |
| Cow position: | chrX:24105710-24105400 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 14-319 |
| Cow position: | chrX:5638084-5638394 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 30-303 |
| Cow position: | chrX:7718915-7718645 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 122, 6 |
| Conread position: | 33-331 |
| Cow position: | chrX:16416570-16416270 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 150, 7 |
| Conread position: | 39-318 |
| Cow position: | chrX:10437610-10437889 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 96 |
| Conread position: | 39-369 |
| Cow position: | chrX:41166904-41167240 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 41-319 |
| Cow position: | chrX:35681396-35681120 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 44-291 |
| Cow position: | chrX:36961692-36961438 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 45-319 |
| Cow position: | chrX:41199158-41198879 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 47-301 |
| Cow position: | chrX:26286030-26285772 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 48-359 |
| Cow position: | chrX:39938474-39938790 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 50-319 |
| Cow position: | chrX:42994660-42994389 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 54-319 |
| Cow position: | chrX:28157541-28157260 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 58-319 |
| Cow position: | chrX:12116084-12115813 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 58-319 |
| Cow position: | chrX:17498122-17497871 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 58-319 |
| Cow position: | chrX:47379430-47379692 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 58-322 |
| Cow position: | chrX:41743951-41743685 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 59-319 |
| Cow position: | chrX:14900694-14900946 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 62-319 |
| Cow position: | chrX:10096065-10095801 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 72-319 |
| Cow position: | chrX:17630780-17631027 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 79-319 |
| Cow position: | chrX:13265607-13265845 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 95, 62 |
| Conread position: | 83-320 |
| Cow position: | chrX:3653773-3653537 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 92-267 |
| Cow position: | chrX:29563372-29563546 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 94-306 |
| Cow position: | chrX:40567604-40567387 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 94-313 |
| Cow position: | chrX:35609992-35609767 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 94-313 |
| Cow position: | chrX:44397021-44396796 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 98-313 |
| Cow position: | chrX:16789853-16790056 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 99-329 |
| Cow position: | chrX:35284618-35284385 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 102-303 |
| Cow position: | chrX:14973745-14973944 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 103-318 |
| Cow position: | chrX:7497234-7497021 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 103-319 |
| Cow position: | chrX:37048583-37048806 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 50 |
Show alignments to all cow chromosomes.