Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 30-178 |
| Cow position: | chr10:57989820-57989676 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 33-197 |
| Cow position: | chr10:19758520-19758685 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 33-197 |
| Cow position: | chr10:19802725-19802890 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 35-151 |
| Cow position: | chr10:39905118-39905232 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-184 |
| Cow position: | chr10:21487090-21487239 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-184 |
| Cow position: | chr10:39041127-39040978 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-185 |
| Cow position: | chr10:13365695-13365545 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-194 |
| Cow position: | chr10:46694200-46694044 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-195 |
| Cow position: | chr10:47157124-47157283 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-197 |
| Cow position: | chr10:10477965-10477798 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 35-198 |
| Cow position: | chr10:25498528-25498690 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-198 |
| Cow position: | chr10:39853838-39853672 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 35-198 |
| Cow position: | chr10:62216782-62216945 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr10:62778523-62778686 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-205 |
| Cow position: | chr10:34686069-34686239 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 96, 6 |
| Conread position: | 35-212 |
| Cow position: | chr10:60192306-60192483 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 35-238 |
| Cow position: | chr10:19511782-19511983 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 40-432 |
| Cow position: | chr10:38546045-38545650 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 41-170 |
| Cow position: | chr10:29846470-29846341 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-171 |
| Cow position: | chr10:7282506-7282376 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr10:62408676-62408539 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-180 |
| Cow position: | chr10:19497135-19496996 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-183 |
| Cow position: | chr10:47906959-47907101 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:280440-280297 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:1375712-1375857 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 41-184 |
| Cow position: | chr10:2123081-2122938 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:8290163-8290302 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 41-184 |
| Cow position: | chr10:16925717-16925859 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:21740571-21740428 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:25359580-25359723 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:32650914-32651057 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-184 |
| Cow position: | chr10:38345181-38345038 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr10:51952437-51952298 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-191 |
| Cow position: | chr10:32578470-32578620 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-196 |
| Cow position: | chr10:57559355-57559200 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr10:11685490-11685331 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr10:29696416-29696569 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-198 |
| Cow position: | chr10:37770002-37770161 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr10:21400490-21400328 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr10:25565077-25564915 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 41-199 |
| Cow position: | chr10:41567284-41567445 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-204 |
| Cow position: | chr10:24977958-24977794 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 41-214 |
| Cow position: | chr10:22842930-22843102 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-218 |
| Cow position: | chr10:124491-124668 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-218 |
| Cow position: | chr10:4192052-4191862 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-218 |
| Cow position: | chr10:14804017-14804200 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr10:39179964-39180146 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr10:39817182-39816999 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr10:40152274-40152094 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 41-218 |
| Cow position: | chr10:41157628-41157811 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-278 |
| Cow position: | chr10:14860147-14860393 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 41-278 |
| Cow position: | chr10:15861956-15861705 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 175, 40 |
| Conread position: | 41-278 |
| Cow position: | chr10:46191539-46191781 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-280 |
| Cow position: | chr10:33346781-33347029 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 41-434 |
| Cow position: | chr10:42628804-42629202 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 43-280 |
| Cow position: | chr10:24298671-24298428 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 47-218 |
| Cow position: | chr10:19496099-19495922 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-278 |
| Cow position: | chr10:8328082-8327846 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 166, 37 |
| Conread position: | 47-310 |
| Cow position: | chr10:31523985-31524253 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 49-218 |
| Cow position: | chr10:41877107-41877281 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 51-346 |
| Cow position: | chr10:54979280-54978978 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 57-218 |
| Cow position: | chr10:14952066-14952227 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 62-197 |
| Cow position: | chr10:56064875-56065010 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 80-221 |
| Cow position: | chr10:49310705-49310847 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 81-183 |
| Cow position: | chr10:68599073-68598970 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 87-276 |
| Cow position: | chr10:42679599-42679785 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 143 |
| Conread position: | 92-198 |
| Cow position: | chr10:24061575-24061468 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 116-278 |
| Cow position: | chr10:60489849-60490022 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 135-381 |
| Cow position: | chr10:8339171-8339424 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 276-431 |
| Cow position: | chr10:28931299-28931144 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 119, 42 |
Show alignments to all cow chromosomes.