Cow genome map

Conread name: rpgl15_e18.y1

Conread position: 33-182
Cow position: chr11:4041265-4041116 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 103, 50

Conread position: 35-137
Cow position: chr11:10210149-10210048 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 35-158
Cow position: chr11:40776729-40776606 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 101, 46

Conread position: 35-185
Cow position: chr11:30305044-30305196 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 97, 46

Conread position: 35-194
Cow position: chr11:8261889-8261732 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 134
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 101, 6

Conread position: 35-194
Cow position: chr11:9220306-9220147 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 133
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 6

Conread position: 35-197
Cow position: chr11:87127654-87127813 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 35-198
Cow position: chr11:12351251-12351089 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 139
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr11:37065308-37065142 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 102, 46

Conread position: 35-199
Cow position: chr11:8519807-8519966 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 83, 6

Conread position: 35-217
Cow position: chr11:25527372-25527557 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 6

Conread position: 35-218
Cow position: chr11:66726278-66726468 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 97, 10

Conread position: 35-427
Cow position: chr11:10090146-10090554 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 48

Conread position: 36-143
Cow position: chr11:44860714-44860608 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 12

Conread position: 36-199
Cow position: chr11:34020703-34020867 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 45

Conread position: 40-198
Cow position: chr11:9659569-9659411 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 134
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 96, 41

Conread position: 40-198
Cow position: chr11:21466895-21467053 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 96, 41

Conread position: 40-198
Cow position: chr11:37491824-37491670 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 132
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 98, 30

Conread position: 41-165
Cow position: chr11:9734828-9734705 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-170
Cow position: chr11:41170873-41170744 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr11:12358606-12358476 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr11:19102667-19102537 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 40

Conread position: 41-171
Cow position: chr11:28229934-28229804 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 40

Conread position: 41-171
Cow position: chr11:77728701-77728571 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr11:28054781-28054644 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr11:29668809-29668675 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 40

Conread position: 41-178
Cow position: chr11:37093242-37093106 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 40

Conread position: 41-182
Cow position: chr11:7113416-7113554 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 11

Conread position: 41-184
Cow position: chr11:1496255-1496112 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 126
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:5343398-5343255 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 123
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:10847264-10847404 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 28

Conread position: 41-184
Cow position: chr11:11987927-11988069 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:17107867-17107724 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:24393136-24393279 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:26125112-26124969 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:37477300-37477157 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:38505785-38505643 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 15

Conread position: 41-184
Cow position: chr11:43514811-43514668 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:52419207-52419350 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:53287636-53287494 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 45

Conread position: 41-184
Cow position: chr11:57628227-57628084 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr11:72110146-72110003 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 40

Conread position: 41-191
Cow position: chr11:54209436-54209582 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 34

Conread position: 41-197
Cow position: chr11:12093376-12093533 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr11:20920926-20920770 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr11:36744361-36744205 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr11:61401232-61401076 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr11:64045817-64045973 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr11:73477127-73477283 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 95, 46

Conread position: 41-198
Cow position: chr11:45111188-45111345 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 135
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr11:15983443-15983605 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr11:67450317-67450479 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-212
Cow position: chr11:42429152-42429324 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 94, 40

Conread position: 41-218
Cow position: chr11:3492830-3493013 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr11:4027744-4027565 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 97, 40

Conread position: 41-218
Cow position: chr11:8244526-8244702 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 95, 24

Conread position: 41-218
Cow position: chr11:19064430-19064247 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr11:67846752-67846569 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 149
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 95, 40

Conread position: 41-224
Cow position: chr11:33194734-33194545 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 93, 40

Conread position: 41-238
Cow position: chr11:31925987-31926187 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 34, 21

Conread position: 41-239
Cow position: chr11:71329463-71329661 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-382
Cow position: chr11:8282895-8283235 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 40

Conread position: 43-176
Cow position: chr11:77235536-77235669 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 114
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 93, 38

Conread position: 43-184
Cow position: chr11:63659760-63659626 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 43-432
Cow position: chr11:7316694-7317092 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 37

Conread position: 44-184
Cow position: chr11:85393989-85393849 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 37

Conread position: 47-184
Cow position: chr11:23877127-23877264 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 89, 34

Conread position: 47-184
Cow position: chr11:32450692-32450829 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 117
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 89, 34

Conread position: 48-212
Cow position: chr11:4065407-4065239 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 82, 33

Conread position: 49-278
Cow position: chr11:17220388-17220161 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 88, 32

Conread position: 51-192
Cow position: chr11:76374371-76374231 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 86, 30

Conread position: 53-198
Cow position: chr11:8887327-8887182 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 126
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 83, 28

Conread position: 62-178
Cow position: chr11:53432226-53432110 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 74, 28

Conread position: 62-215
Cow position: chr11:28063516-28063667 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 75, 19

Conread position: 74-194
Cow position: chr11:59369460-59369580 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 7

Conread position: 75-171
Cow position: chr11:15998788-15998885 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 84-198
Cow position: chr11:8267681-8267566 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 93-198
Cow position: chr11:256317-256211 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 227-432
Cow position: chr11:7113899-7114099 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 167, 19

Show alignments to all cow chromosomes.