Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 16-183 |
| Cow position: | chr13:3654464-3654299 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 120, 25 |
| Conread position: | 18-432 |
| Cow position: | chr13:54284430-54284856 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 290 |
| Conread position: | 27-218 |
| Cow position: | chr13:30063996-30064179 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 33-227 |
| Cow position: | chr13:34325801-34325604 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 33-429 |
| Cow position: | chr13:20542500-20542096 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 35-171 |
| Cow position: | chr13:4483676-4483809 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 35-175 |
| Cow position: | chr13:2908570-2908430 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 6 |
| Conread position: | 35-185 |
| Cow position: | chr13:3567674-3567823 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-185 |
| Cow position: | chr13:4178771-4178622 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr13:3277034-3277196 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr13:30657094-30656935 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 35-198 |
| Cow position: | chr13:33824851-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr13:56730406-56730245 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 35-199 |
| Cow position: | chr13:34142779-34142615 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 103, 6 |
| Conread position: | 35-212 |
| Cow position: | chr13:46732347-46732174 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 35-218 |
| Cow position: | chr13:34186805-34186626 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 35-270 |
| Cow position: | chr13:34767407-34767175 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 172, 46 |
| Conread position: | 35-431 |
| Cow position: | chr13:34937027-34937444 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 40-198 |
| Cow position: | chr13:34693047-34693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 40-198 |
| Cow position: | chr13:62327700-62327540 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 41-169 |
| Cow position: | chr13:47230102-47229974 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr13:1593270-1593134 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 41-184 |
| Cow position: | chr13:676761-676904 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:2388933-2388790 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:9044386-9044528 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:17308360-17308503 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:32544944-32545087 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:32737937-32737794 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:32986171-32986029 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:35757126-35757269 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:49973569-49973712 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:50109347-50109490 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr13:60466222-60466365 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-195 |
| Cow position: | chr13:31832485-31832636 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr13:31612450-31612294 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 41-198 |
| Cow position: | chr13:34042484-34042327 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr13:15520630-15520472 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-200 |
| Cow position: | chr13:21840309-21840147 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 41-204 |
| Cow position: | chr13:3058226-3058059 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 41-218 |
| Cow position: | chr13:4872962-4873141 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr13:13324634-13324817 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 41-218 |
| Cow position: | chr13:34911493-34911315 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-238 |
| Cow position: | chr13:4940973-4941170 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-239 |
| Cow position: | chr13:34868628-34868825 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 43-171 |
| Cow position: | chr13:6668236-6668108 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 47-184 |
| Cow position: | chr13:15924493-15924356 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 51-199 |
| Cow position: | chr13:31734190-31734038 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 65-432 |
| Cow position: | chr13:15451647-15451277 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 66-212 |
| Cow position: | chr13:11799852-11799708 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 66-218 |
| Cow position: | chr13:35030462-35030614 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 80-198 |
| Cow position: | chr13:33927664-33927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.