Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 33-184 |
| Cow position: | chr14:7472128-7472272 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 8 |
| Conread position: | 33-198 |
| Cow position: | chr14:41085033-41084861 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 33-218 |
| Cow position: | chr14:38532539-38532352 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 48 |
| Conread position: | 34-213 |
| Cow position: | chr14:46464828-46465007 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 35-178 |
| Cow position: | chr14:13479978-13479836 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-192 |
| Cow position: | chr14:42152079-42152236 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-192 |
| Cow position: | chr14:44422310-44422466 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-194 |
| Cow position: | chr14:44130671-44130827 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-195 |
| Cow position: | chr14:45850978-45851137 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 17 |
| Conread position: | 35-198 |
| Cow position: | chr14:5201325-5201163 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:7830784-7830622 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:13660232-13660068 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:22242637-22242799 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:23690473-23690311 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-198 |
| Cow position: | chr14:45565084-45565246 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:45712230-45712073 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr14:45767758-45767920 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-198 |
| Cow position: | chr14:47624316-47624471 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 35-199 |
| Cow position: | chr14:44855670-44855508 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-218 |
| Cow position: | chr14:44226153-44226335 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 100, 8 |
| Conread position: | 35-393 |
| Cow position: | chr14:40339438-40339797 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 32 |
| Conread position: | 40-198 |
| Cow position: | chr14:45771017-45770861 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 40-217 |
| Cow position: | chr14:44551642-44551821 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 41-171 |
| Cow position: | chr14:5511583-5511713 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr14:17685157-17685295 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 41-178 |
| Cow position: | chr14:19328507-19328370 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr14:22031926-22031789 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-178 |
| Cow position: | chr14:44287489-44287352 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:750331-750474 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:2284100-2284243 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:5528823-5528966 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:9045327-9045470 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:13778716-13778859 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:20782217-20782360 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:28994093-28993950 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:45029362-45029220 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr14:45672283-45672141 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 41-191 |
| Cow position: | chr14:13621386-13621235 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-197 |
| Cow position: | chr14:16273534-16273380 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-197 |
| Cow position: | chr14:23901039-23900883 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-198 |
| Cow position: | chr14:19619981-19620138 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr14:30596623-30596466 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 41-198 |
| Cow position: | chr14:36968016-36968173 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr14:37223663-37223819 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-198 |
| Cow position: | chr14:45833915-45834074 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-198 |
| Cow position: | chr14:45917179-45917336 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr14:23257120-23257282 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr14:29048142-29047980 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-212 |
| Cow position: | chr14:35928940-35929105 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-217 |
| Cow position: | chr14:17001293-17001122 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr14:17491695-17491512 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr14:30585190-30585008 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr14:33394015-33393835 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr14:41407582-41407754 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-223 |
| Cow position: | chr14:40169941-40169764 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-238 |
| Cow position: | chr14:15276819-15276622 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-243 |
| Cow position: | chr14:45160858-45161059 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 41-270 |
| Cow position: | chr14:37414125-37413896 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-278 |
| Cow position: | chr14:12608943-12609189 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 41-283 |
| Cow position: | chr14:33675572-33675826 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 41-393 |
| Cow position: | chr14:45303603-45303244 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-426 |
| Cow position: | chr14:35387388-35386998 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 43-198 |
| Cow position: | chr14:44685806-44685961 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 43-278 |
| Cow position: | chr14:22019156-22019398 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 174, 38 |
| Conread position: | 44-184 |
| Cow position: | chr14:11154401-11154262 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 44-212 |
| Cow position: | chr14:13302794-13302960 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 46-199 |
| Cow position: | chr14:50134840-50134994 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 47-184 |
| Cow position: | chr14:12743301-12743164 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-184 |
| Cow position: | chr14:13864315-13864178 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-197 |
| Cow position: | chr14:16919923-16919773 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-218 |
| Cow position: | chr14:50110333-50110506 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 47-243 |
| Cow position: | chr14:44377203-44377403 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 52-198 |
| Cow position: | chr14:45205850-45205995 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 60-218 |
| Cow position: | chr14:38146355-38146513 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 62-218 |
| Cow position: | chr14:13273029-13273187 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 64-430 |
| Cow position: | chr14:46084401-46084778 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 67-184 |
| Cow position: | chr14:43557223-43557340 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 67-185 |
| Cow position: | chr14:45080833-45080950 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 250-435 |
| Cow position: | chr14:44377459-44377645 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 145, 75 |
| Conread position: | 276-432 |
| Cow position: | chr14:17764784-17764630 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 36 |
Show alignments to all cow chromosomes.