Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 12-184 |
| Cow position: | chr16:2727899-2727730 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 15-184 |
| Cow position: | chr16:5483711-5483881 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 30-184 |
| Cow position: | chr16:43897864-43897713 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 31-212 |
| Cow position: | chr16:18499944-18499767 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 33-183 |
| Cow position: | chr16:36361959-36361805 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 33-198 |
| Cow position: | chr16:10808556-10808722 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 34-215 |
| Cow position: | chr16:51685845-51686022 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 35-173 |
| Cow position: | chr16:27734393-27734255 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-184 |
| Cow position: | chr16:26663158-26663307 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-192 |
| Cow position: | chr16:11052571-11052726 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 35-198 |
| Cow position: | chr16:7906029-7906191 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 35-198 |
| Cow position: | chr16:15492118-15492281 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-198 |
| Cow position: | chr16:20254901-20254739 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr16:34529730-34529893 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 35-210 |
| Cow position: | chr16:30047901-30048078 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 35-375 |
| Cow position: | chr16:25156813-25156465 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 35-432 |
| Cow position: | chr16:42740013-42739610 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 10 |
| Conread position: | 40-198 |
| Cow position: | chr16:6549110-6548952 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-198 |
| Cow position: | chr16:19713472-19713317 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 41-156 |
| Cow position: | chr16:42050972-42050857 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 41-171 |
| Cow position: | chr16:14666414-14666284 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr16:9777500-9777637 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr16:12538509-12538373 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-178 |
| Cow position: | chr16:15184218-15184355 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr16:15566165-15566296 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 41-180 |
| Cow position: | chr16:5918898-5919037 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:1568039-1567896 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:2239317-2239182 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-184 |
| Cow position: | chr16:8816689-8816546 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:10204015-10203872 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:23253092-23252949 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:25341380-25341523 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr16:28471686-28471544 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-196 |
| Cow position: | chr16:6943047-6943202 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-197 |
| Cow position: | chr16:53045769-53045925 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 41-198 |
| Cow position: | chr16:2483727-2483570 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr16:23982726-23982882 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr16:39821047-39821202 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 41-199 |
| Cow position: | chr16:5661265-5661427 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr16:25188058-25188217 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 41-204 |
| Cow position: | chr16:31832046-31832213 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 41-214 |
| Cow position: | chr16:31375865-31375694 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 41-216 |
| Cow position: | chr16:32155-32334 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 41-218 |
| Cow position: | chr16:335705-335877 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 41-218 |
| Cow position: | chr16:31592489-31592313 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 40 |
| Conread position: | 41-226 |
| Cow position: | chr16:28170948-28170758 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-238 |
| Cow position: | chr16:2411554-2411356 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-303 |
| Cow position: | chr16:49257168-49256896 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 41-421 |
| Cow position: | chr16:49235735-49235343 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 41-434 |
| Cow position: | chr16:29033131-29033532 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 43-278 |
| Cow position: | chr16:32935592-32935832 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 47-171 |
| Cow position: | chr16:40296757-40296633 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-177 |
| Cow position: | chr16:10437664-10437795 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-184 |
| Cow position: | chr16:29046443-29046580 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-198 |
| Cow position: | chr16:25085042-25085193 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 47-205 |
| Cow position: | chr16:836450-836608 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-278 |
| Cow position: | chr16:9929961-9930197 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 48-191 |
| Cow position: | chr16:36282819-36282963 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 48-214 |
| Cow position: | chr16:52815065-52814903 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 51-184 |
| Cow position: | chr16:407606-407473 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 62-319 |
| Cow position: | chr16:16273398-16273132 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 19 |
| Conread position: | 63-193 |
| Cow position: | chr16:56551557-56551688 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 64-174 |
| Cow position: | chr16:4302890-4302780 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 65-195 |
| Cow position: | chr16:29675939-29675810 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 70-200 |
| Cow position: | chr16:25153167-25153297 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 81-432 |
| Cow position: | chr16:25257058-25257420 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 253 |
| Conread position: | 148-418 |
| Cow position: | chr16:42050603-42050341 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 258-410 |
| Cow position: | chr16:49234830-49234678 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 137, 6 |
Show alignments to all cow chromosomes.