Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 6-184 |
| Cow position: | chr19:43143881-43144064 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 11-198 |
| Cow position: | chr19:341397-341583 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 33-432 |
| Cow position: | chr19:377705-377309 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 35-178 |
| Cow position: | chr19:32665730-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-184 |
| Cow position: | chr19:5729028-5729177 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-197 |
| Cow position: | chr19:1032275-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr19:416861-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-198 |
| Cow position: | chr19:28376683-28376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 35-217 |
| Cow position: | chr19:10672107-10671924 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 40-197 |
| Cow position: | chr19:40817499-40817341 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 41-154 |
| Cow position: | chr19:32244889-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-160 |
| Cow position: | chr19:439256-439137 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-171 |
| Cow position: | chr19:893410-893280 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-177 |
| Cow position: | chr19:2274173-2274036 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-178 |
| Cow position: | chr19:7488518-7488655 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-183 |
| Cow position: | chr19:439452-439310 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-183 |
| Cow position: | chr19:20104918-20105060 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr19:38100-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr19:170542-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr19:687270-687411 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 41-184 |
| Cow position: | chr19:32211868-32211725 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr19:33873631-33873774 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr19:33941815-33941958 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 41-197 |
| Cow position: | chr19:40852233-40852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr19:772804-772964 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr19:7342273-7342435 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 41-218 |
| Cow position: | chr19:52151625-52151442 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-219 |
| Cow position: | chr19:42249009-42249186 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-238 |
| Cow position: | chr19:39390713-39390910 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-259 |
| Cow position: | chr19:6553807-6554026 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 41-278 |
| Cow position: | chr19:42648907-42648664 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 175, 40 |
| Conread position: | 41-290 |
| Cow position: | chr19:35376992-35377242 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 44-193 |
| Cow position: | chr19:76061-75911 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 46-198 |
| Cow position: | chr19:29209807-29209959 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 47-178 |
| Cow position: | chr19:28581448-28581317 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-191 |
| Cow position: | chr19:172422-172566 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 47-198 |
| Cow position: | chr19:204172-204323 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-198 |
| Cow position: | chr19:4532418-4532276 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 51-433 |
| Cow position: | chr19:163215-162823 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 57-432 |
| Cow position: | chr19:42906-43289 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 61-398 |
| Cow position: | chr19:27052623-27052289 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 65-319 |
| Cow position: | chr19:32223220-32222955 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 75-197 |
| Cow position: | chr19:5208411-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 135-432 |
| Cow position: | chr19:137057-136752 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 168-433 |
| Cow position: | chr19:44532444-44532725 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 168-433 |
| Cow position: | chr19:47610415-47610135 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 168 |
| Conread position: | 233-434 |
| Cow position: | chr19:3138002-3138211 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 149, 92 |
Show alignments to all cow chromosomes.