Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 21-427 |
| Cow position: | chr21:9870008-9870414 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 26-239 |
| Cow position: | chr21:3779033-3779245 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 35-198 |
| Cow position: | chr21:2529851-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 35-198 |
| Cow position: | chr21:3798096-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 35-198 |
| Cow position: | chr21:4457102-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 35-198 |
| Cow position: | chr21:35596644-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 35-199 |
| Cow position: | chr21:3615588-3615750 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-218 |
| Cow position: | chr21:2502166-2502350 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 35-224 |
| Cow position: | chr21:2416503-2416682 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 35-408 |
| Cow position: | chr21:30226295-30226666 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 36-191 |
| Cow position: | chr21:2716442-2716286 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 40-185 |
| Cow position: | chr21:2788712-2788568 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-198 |
| Cow position: | chr21:13123726-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 136 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-199 |
| Cow position: | chr21:39425343-39425506 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-432 |
| Cow position: | chr21:2541132-2540733 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 41-170 |
| Cow position: | chr21:2883467-2883338 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-171 |
| Cow position: | chr21:10850361-10850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 41-178 |
| Cow position: | chr21:31559375-31559238 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-183 |
| Cow position: | chr21:12055720-12055578 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-183 |
| Cow position: | chr21:27282666-27282808 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-183 |
| Cow position: | chr21:37045191-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr21:1191444-1191587 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr21:2674330-2674188 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr21:6339847-6339990 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr21:11453375-11453232 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr21:30562083-30562226 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-184 |
| Cow position: | chr21:30599645-30599502 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-197 |
| Cow position: | chr21:2510932-2511088 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-197 |
| Cow position: | chr21:4090930-4091086 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-197 |
| Cow position: | chr21:26650322-26650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-197 |
| Cow position: | chr21:46915869-46916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr21:146204-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr21:34293297-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-198 |
| Cow position: | chr21:40271396-40271238 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 41-218 |
| Cow position: | chr21:11505868-11506060 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 41-218 |
| Cow position: | chr21:18820147-18819970 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-224 |
| Cow position: | chr21:26638184-26637995 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-270 |
| Cow position: | chr21:21517407-21517646 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 41-396 |
| Cow position: | chr21:23812156-23812519 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 41-431 |
| Cow position: | chr21:9891883-9892294 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 118 |
| Conread position: | 41-434 |
| Cow position: | chr21:359315-359718 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 41-434 |
| Cow position: | chr21:4183801-4184184 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 43-198 |
| Cow position: | chr21:1291908-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 44-170 |
| Cow position: | chr21:33251790-33251916 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 44-178 |
| Cow position: | chr21:48116385-48116519 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 44-210 |
| Cow position: | chr21:4589707-4589541 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 45-205 |
| Cow position: | chr21:21914571-21914729 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 47-157 |
| Cow position: | chr21:47948396-47948505 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 47-198 |
| Cow position: | chr21:34258703-34258551 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 65-239 |
| Cow position: | chr21:7267231-7267055 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 16 |
| Conread position: | 97-432 |
| Cow position: | chr21:29105-29448 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 235 |
Show alignments to all cow chromosomes.