Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 32-184 |
| Cow position: | chr22:36861430-36861279 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 33-218 |
| Cow position: | chr22:1048503-1048685 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 35-184 |
| Cow position: | chr22:15313850-15313701 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-184 |
| Cow position: | chr22:39469420-39469272 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-185 |
| Cow position: | chr22:1319500-1319649 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-191 |
| Cow position: | chr22:117739-117583 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 137 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr22:36736861-36737024 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 6 |
| Conread position: | 35-198 |
| Cow position: | chr22:38937980-38937818 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-198 |
| Cow position: | chr22:39882073-39881911 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr22:42771557-42771720 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 102, 48 |
| Conread position: | 35-199 |
| Cow position: | chr22:36533640-36533475 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-212 |
| Cow position: | chr22:44352855-44352687 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 35-218 |
| Cow position: | chr22:1321696-1321872 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 35-276 |
| Cow position: | chr22:34598769-34599010 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 35-292 |
| Cow position: | chr22:6503574-6503308 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 35-397 |
| Cow position: | chr22:8136101-8135737 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 35-431 |
| Cow position: | chr22:1283548-1283148 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 46 |
| Conread position: | 35-432 |
| Cow position: | chr22:41419591-41419193 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-435 |
| Cow position: | chr22:44609699-44610090 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 36-198 |
| Cow position: | chr22:15851432-15851584 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 40-198 |
| Cow position: | chr22:157800-157641 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 40-198 |
| Cow position: | chr22:46547557-46547399 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-218 |
| Cow position: | chr22:5672844-5673024 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 41-163 |
| Cow position: | chr22:45879502-45879379 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 41-164 |
| Cow position: | chr22:44396558-44396681 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-170 |
| Cow position: | chr22:560597-560468 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 41-178 |
| Cow position: | chr22:21589432-21589569 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr22:36183866-36184001 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 41-184 |
| Cow position: | chr22:3278246-3278105 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-184 |
| Cow position: | chr22:10909725-10909582 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:19143591-19143448 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:20240733-20240591 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:31313449-31313590 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:31334927-31334787 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:42991280-42991423 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:44934087-44934230 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr22:46581479-46581337 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 41-191 |
| Cow position: | chr22:16200582-16200733 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-192 |
| Cow position: | chr22:5233197-5233046 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-192 |
| Cow position: | chr22:18027387-18027538 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 41-198 |
| Cow position: | chr22:525585-525428 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr22:1860847-1861004 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr22:5308212-5308369 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 41-198 |
| Cow position: | chr22:5932888-5932735 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 41-198 |
| Cow position: | chr22:46853451-46853607 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 41-199 |
| Cow position: | chr22:537209-537371 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr22:1878901-1879063 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr22:6020770-6020932 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr22:27309665-27309503 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr22:37266081-37266241 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 95, 45 |
| Conread position: | 41-199 |
| Cow position: | chr22:44489995-44490155 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-203 |
| Cow position: | chr22:10546753-10546918 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-204 |
| Cow position: | chr22:27284139-27284305 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-205 |
| Cow position: | chr22:34168440-34168603 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 41-218 |
| Cow position: | chr22:693734-693914 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-224 |
| Cow position: | chr22:35672248-35672059 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-243 |
| Cow position: | chr22:18816277-18816076 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-389 |
| Cow position: | chr22:1270424-1270085 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 41-432 |
| Cow position: | chr22:23853439-23853840 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-433 |
| Cow position: | chr22:13917611-13918015 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 43-197 |
| Cow position: | chr22:44369514-44369362 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 47-197 |
| Cow position: | chr22:16814000-16814150 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 47-197 |
| Cow position: | chr22:17328625-17328475 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 47-299 |
| Cow position: | chr22:11031074-11031337 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 51-184 |
| Cow position: | chr22:327050-326919 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 60-435 |
| Cow position: | chr22:3306606-3306219 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 84-198 |
| Cow position: | chr22:13773045-13773159 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 216-434 |
| Cow position: | chr22:46547862-46548074 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 252-432 |
| Cow position: | chr22:1322134-1322307 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 31 |
Show alignments to all cow chromosomes.