Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 26-184 |
| Cow position: | chr23:30636208-30636050 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 32-184 |
| Cow position: | chr23:2716487-2716639 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 32-198 |
| Cow position: | chr23:15525709-15525875 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 35-156 |
| Cow position: | chr23:2524094-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-178 |
| Cow position: | chr23:2757696-2757839 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-198 |
| Cow position: | chr23:988543-988383 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr23:2574638-2574800 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 35-198 |
| Cow position: | chr23:2765350-2765188 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 102, 6 |
| Conread position: | 35-198 |
| Cow position: | chr23:4277058-4277220 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr23:15219789-15219626 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 35-198 |
| Cow position: | chr23:31591700-31591537 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-199 |
| Cow position: | chr23:7273734-7273897 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-205 |
| Cow position: | chr23:8980217-8980049 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-270 |
| Cow position: | chr23:16615892-16615651 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 181, 8 |
| Conread position: | 35-384 |
| Cow position: | chr23:29474454-29474100 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 38-184 |
| Cow position: | chr23:20302318-20302463 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 40-218 |
| Cow position: | chr23:5778980-5778803 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 41-171 |
| Cow position: | chr23:31595128-31594998 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-177 |
| Cow position: | chr23:20156109-20155972 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 41-178 |
| Cow position: | chr23:2027011-2026874 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr23:22147142-22147009 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-184 |
| Cow position: | chr23:3881597-3881454 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:4359938-4360081 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:4640516-4640373 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:14965644-14965501 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:16616738-16616595 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:19489650-19489793 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr23:28217398-28217541 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 45 |
| Conread position: | 41-197 |
| Cow position: | chr23:31446923-31447079 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr23:28913505-28913660 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-211 |
| Cow position: | chr23:25683953-25683786 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-214 |
| Cow position: | chr23:38578385-38578555 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-218 |
| Cow position: | chr23:2313130-2312949 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 41-218 |
| Cow position: | chr23:14974455-14974277 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 41-218 |
| Cow position: | chr23:15177182-15177358 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-218 |
| Cow position: | chr23:19950475-19950295 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-218 |
| Cow position: | chr23:22875566-22875401 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 41-219 |
| Cow position: | chr23:4434568-4434744 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 41-238 |
| Cow position: | chr23:27399612-27399808 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-294 |
| Cow position: | chr23:1327366-1327102 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 45-184 |
| Cow position: | chr23:4888785-4888924 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 47-184 |
| Cow position: | chr23:967236-967099 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 47-198 |
| Cow position: | chr23:11778601-11778753 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 47-198 |
| Cow position: | chr23:29452206-29452053 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 47-217 |
| Cow position: | chr23:36031259-36031090 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 53-278 |
| Cow position: | chr23:31650790-31650559 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 62-198 |
| Cow position: | chr23:4510201-4510342 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 79-339 |
| Cow position: | chr23:1402737-1402471 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 52 |
Show alignments to all cow chromosomes.