Cow genome map
| Conread name: | rpgl15_e18.y1 |
| Conread position: | 35-184 |
| Cow position: | chr28:18520317-18520164 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 35-184 |
| Cow position: | chr28:34594125-34594274 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 35-185 |
| Cow position: | chr28:7901502-7901658 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 35-191 |
| Cow position: | chr28:9136903-9136749 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-197 |
| Cow position: | chr28:17324203-17324036 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 35-198 |
| Cow position: | chr28:2592062-2592224 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 140 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-198 |
| Cow position: | chr28:4380697-4380535 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 100, 6 |
| Conread position: | 35-198 |
| Cow position: | chr28:9155132-9154974 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 152, 6 |
| Conread position: | 35-198 |
| Cow position: | chr28:9954279-9954442 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 35-198 |
| Cow position: | chr28:24667727-24667888 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 35-278 |
| Cow position: | chr28:2846028-2845780 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 100, 46 |
| Conread position: | 36-184 |
| Cow position: | chr28:14705523-14705376 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 36-198 |
| Cow position: | chr28:1387252-1387091 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 37-218 |
| Cow position: | chr28:10463002-10462821 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 101, 44 |
| Conread position: | 40-198 |
| Cow position: | chr28:13490302-13490462 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 40-199 |
| Cow position: | chr28:1931833-1931672 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 41-165 |
| Cow position: | chr28:5566006-5566130 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-171 |
| Cow position: | chr28:1505004-1505134 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-173 |
| Cow position: | chr28:17667361-17667229 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr28:782547-782684 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr28:1814715-1814578 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-178 |
| Cow position: | chr28:5937633-5937766 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-183 |
| Cow position: | chr28:8378721-8378863 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:485410-485267 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 41-184 |
| Cow position: | chr28:2083749-2083891 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:3192639-3192496 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:5114659-5114516 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:7740638-7740776 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 41-184 |
| Cow position: | chr28:12410071-12409930 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 41-184 |
| Cow position: | chr28:13460122-13460265 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:14750700-14750842 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 41-184 |
| Cow position: | chr28:17388634-17388777 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-184 |
| Cow position: | chr28:29819886-29820029 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-191 |
| Cow position: | chr28:6539109-6538958 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-196 |
| Cow position: | chr28:33252466-33252615 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-197 |
| Cow position: | chr28:13440724-13440568 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-197 |
| Cow position: | chr28:30805535-30805379 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr28:1167729-1167572 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-198 |
| Cow position: | chr28:2724738-2724581 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr28:7002142-7002299 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-198 |
| Cow position: | chr28:10581834-10581675 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 41-198 |
| Cow position: | chr28:22260998-22260842 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr28:6780181-6780019 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-199 |
| Cow position: | chr28:7822410-7822572 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-213 |
| Cow position: | chr28:1953282-1953459 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-217 |
| Cow position: | chr28:34649095-34649271 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 41-218 |
| Cow position: | chr28:15682273-15682443 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 41-218 |
| Cow position: | chr28:22233245-22233064 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 41-218 |
| Cow position: | chr28:24587587-24587770 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-246 |
| Cow position: | chr28:8721295-8721097 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 41-307 |
| Cow position: | chr28:10618962-10618695 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 41-412 |
| Cow position: | chr28:2989565-2989175 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 41-428 |
| Cow position: | chr28:5797584-5797978 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 41-430 |
| Cow position: | chr28:21359154-21359554 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 42-292 |
| Cow position: | chr28:21325944-21326193 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 44-184 |
| Cow position: | chr28:5751551-5751410 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 47-184 |
| Cow position: | chr28:15377833-15377697 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 48-184 |
| Cow position: | chr28:32792220-32792085 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 48-432 |
| Cow position: | chr28:5812851-5813232 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 49-184 |
| Cow position: | chr28:26426091-26425956 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 50-386 |
| Cow position: | chr28:7790125-7789784 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 233 |
| Conread position: | 58-199 |
| Cow position: | chr28:24652947-24652806 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 62-432 |
| Cow position: | chr28:10071153-10071518 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 84-274 |
| Cow position: | chr28:11357519-11357320 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 128-432 |
| Cow position: | chr28:7817377-7817698 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 141-434 |
| Cow position: | chr28:5764499-5764787 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 232-432 |
| Cow position: | chr28:28117845-28118048 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 13 |
Show alignments to all cow chromosomes.